FastQCFastQC Report
Thu 19 Nov 2020
000000000-JCJTB_l01_n02_1.2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-JCJTB_l01_n02_1.2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11275012
Sequences flagged as poor quality0
Sequence length251
%GC41

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGGG102250.027.914421245
GTGGTCC67000.017.186565245
GCGTCGG90450.015.710336245
TCGCCGG120650.015.534602245
CGGTGGG119050.015.125996245
CGTATCC137600.013.710028245
TAGATCC113750.013.461535245
AAAGAGG292350.010.056438245
GTCGCCC79900.09.8122635245
AGAGCGC120700.07.713338245
GCCGTAC82350.06.545233245
AGAGTGG111850.05.9141703245
TCTCTCC363800.05.791643245
CTCTCCC335250.05.6636834245
AGCGTCC71502.1827873E-115.6538453245
CTCACCC180800.05.21709245
CGTGTCC65607.898598E-85.0419197245
Produced by FastQC (version 0.11.5)