FastQCFastQC Report
Thu 19 Nov 2020
000000000-JCJTB_l01_n01_3.3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-JCJTB_l01_n01_3.3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences704503
Sequences flagged as poor quality0
Sequence length251
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTGG2700.002158446722.6851849
CTTAACG4952.0148406E-417.3232331
TATCCCC7503.1434046E-413.066667245
ACACACC10650.00586486059.201879245
TATGGTT12300.00188962298.9634152
TCACTCC12450.00210972368.855422245
GGTTTTG11200.0088651398.7500014
TCCTCCC17205.889683E-58.546512245
CCCCTCC23354.3963337E-78.394004245
ATTAGTT14850.00112405648.2491593
ATCCCCC6350.00178570777.7165356245
CCCCGGA3700.00120071787.28378430-34
CCTCCTC22600.00136618646.5044246245
CCCTCCC24705.27464E-46.4473686245
TCTTCCC23200.00183612496.336207245
CATCCCC7957.9411984E-76.1635222240-244
CTCTTCC27853.3454652E-46.157989245
TCCGCCT4900.0033944816.0225-229
CCCCCAC10102.961733E-75.579208240-244
AAAGGAA29900.0051726175.32608751
Produced by FastQC (version 0.11.5)