FastQCFastQC Report
Thu 19 Nov 2020
000000000-JCJTB_l01_n01_2.5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-JCJTB_l01_n01_2.5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3912486
Sequences flagged as poor quality0
Sequence length251
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTGCGG18000.00740444756.80555531
CATACCC33502.0210919E-66.5820885245
CTCTCCC89250.06.313725245
CACTCCC51601.22654455E-85.935077245
TCCCCCC87150.05.62249245
CCTCCCC92950.05.535234245
CCCATCC39101.4895729E-45.326087245
CTCCCCC92500.05.297297245
CATCCCC39751.9069316E-45.2389936245
TCTCCCC77452.055458E-105.219496245
TCCCCTC86252.910383E-115.1130433245
CCACCCC51151.2335828E-55.0293255245
TCTCTCC95355.456968E-125.010487245
Produced by FastQC (version 0.11.5)