FastQCFastQC Report
Thu 19 Nov 2020
000000000-JCJTB_l01_n01_2.1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-JCJTB_l01_n01_2.1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1326991
Sequences flagged as poor quality0
Sequence length251
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGCTC5209.846938E-47.0673075245
CGGGACT3850.00182969947.020-24
CACTGAA20100.00287988556.703985
CCCCGCT5706.51306E-56.447368240-244
CCCCTCC39507.0665374E-76.2025313245
TCTCTCC35956.3799907E-66.1335187245
CTCCCCC35203.0216483E-55.9161935245
TCCCTCC35253.0879928E-55.907801245
TTCCCCT30450.00105065385.632184245
ATTGATG36052.6886276E-45.43689351
CCCTCCT31700.00174764475.4100947245
CCCCCAC17700.05.398305235-239
CCCCTTC29600.00460366165.3800673245
AAATGCT29950.0052860615.31719545
CCCTCCC39651.8317017E-45.252207245
CTTCCCC33050.0029497565.1891074245
CCTTCCC33400.003364475.134731245
CCTCCTC43201.1991022E-45.104167245
TCCCCGC7757.490568E-45.0580645240-244
CCCCCCG6300.0095513625.055556240-244
Produced by FastQC (version 0.11.5)