FastQCFastQC Report
Tue 22 Dec 2020
000000000-JCJPN_l01_n01_HRB0206.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-JCJPN_l01_n01_HRB0206.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71873
Sequences flagged as poor quality0
Sequence length151
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCCAACATCTCGTATG37215.177187539131524TruSeq Adapter, Index 11 (97% over 36bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCCAACATCTCGTAT13911.9353582012716877TruSeq Adapter, Index 11 (97% over 36bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCCAACATCTCGTATGC750.1043507297594368TruSeq Adapter, Index 11 (97% over 35bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)