FastQCFastQC Report
Sat 23 Nov 2024
000000000-GNC2B_l01_n01_run2_repeat_GyrBATH874.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-GNC2B_l01_n01_run2_repeat_GyrBATH874.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7180
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCGGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA130.181058495821727No Hit
AGGCCCGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA120.1671309192200557No Hit
CGGCCGGGTATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA120.1671309192200557No Hit
CGGCCCGGGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA100.1392757660167131No Hit
AGGCCGGCGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA100.1392757660167131No Hit
AGGCCGGCGATGTACATTGGCGACACCTCCGACGGCACGGGCCTGCACCA90.12534818941504178No Hit
AGGCCAGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA80.11142061281337048No Hit
AGGCCCGGTATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA80.11142061281337048No Hit
CGGCCTGGGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA80.11142061281337048No Hit
CGGCCGGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA80.11142061281337048No Hit
AGGCCGGGCATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA80.11142061281337048No Hit
AGCCCGGGGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA80.11142061281337048No Hit
CGGCCTGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA80.11142061281337048No Hit
AGTCCGGCGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA80.11142061281337048No Hit
AGGCCGGGGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA80.11142061281337048No Hit
AGACCGGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA80.11142061281337048No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)