FastQCFastQC Report
Wed 27 Nov 2024
000000000-GNC2B_l01_n01_micro_run2_repeat_GyrBATH68.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-GNC2B_l01_n01_micro_run2_repeat_GyrBATH68.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28920
Sequences flagged as poor quality0
Sequence length301
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCGGGGATGTACATCGGCGATACAGACGACGGTAGCGGTCTGCATCA540.18672199170124482No Hit
AGGCCGGGGATGTATATCGGCGATACAGACGACGGTAGCGGTCTGCATCA500.17289073305670816No Hit
CGGCCGGGGATGTATATCGGCGATACAGACGACGGTAGCGGTCTGCATCA360.12448132780082986No Hit
AGGCCGGGGATGTACATCGGCGATACAGACGACGGTAGCGGTCTGCATCA350.12102351313969571No Hit
CGGCCGGGTATGTACATCGGCGATACAGACGACGGTAGCGGTCTGCATCA350.12102351313969571No Hit
AGGCCGGCGATGTACATCGGCGATACAGACGACGGTAGCGGTCTGCATCA330.1141078838174274No Hit
AGGCCCGGGATGTATATCGGCGATACAGACGACGGTAGCGGTCTGCATCA300.1037344398340249No Hit
AGTCCGGGGATGTACATCGGCGATACAGACGACGGTAGCGGTCTGCATCA300.1037344398340249No Hit
AGGCCGGGAATGTACATCGGCGATACAGACGACGGTAGCGGTCTGCATCA290.10027662517289072No Hit
AGGCCGGCTATGTATATCGGCGATACAGACGACGGTAGCGGTCTGCATCA290.10027662517289072No Hit
AGGCCGGGTATGTACATCGGCGATACAGACGACGGTAGCGGTCTGCATCA290.10027662517289072No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)