FastQCFastQC Report
Wed 27 Nov 2024
000000000-GNC2B_l01_n01_micro_run2_repeat_GyrBATH31.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-GNC2B_l01_n01_micro_run2_repeat_GyrBATH31.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34961
Sequences flagged as poor quality0
Sequence length301
%GC64

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCGGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA710.2030834358284946No Hit
AGGCCGGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA520.1487371642687566No Hit
AGGCCAGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA410.1172735333657504No Hit
AGGCCGGGAATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA370.10583221303738452No Hit
AGCCCGGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA370.10583221303738452No Hit
AGGCCGGCGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA370.10583221303738452No Hit
CGGCCGGGGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA360.10297188295529305No Hit
CGGCCTGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA350.10011155287320157No Hit
AGGCCGGGTATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA350.10011155287320157No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)