FastQCFastQC Report
Wed 13 Nov 2024
000000000-GNBP7_l01.1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-GNBP7_l01.1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3939088
Sequences flagged as poor quality0
Sequence length301
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG115446929.30802764497772No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG2290035.813604570398021No Hit
GGCTTGGTCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTG1183213.003766354039311No Hit
GGCTTGGTCATTTAGAGGAAGTAGAAGTCGTAACAAGGTTTCCGTAGGTG795572.0196806976640276No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG448201.1378268269203429No Hit
GGCTTGGCATCGATGAAGAACGCAGCCGCTGTCTCTTATACACATCTCCG274690.6973441568200558No Hit
GGCTTGATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTG189250.48044115795331305No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG186900.47447531002099985No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAAGGACATCTCGTAT76320.19375043157197808TruSeq Adapter, Index 2 (97% over 38bp)
GGCTTGGTCATTTAGAGGAAGAACGCAGCCGCTGTCTCTTATACACATCT53460.13571669381339033No Hit
GGCTTGGTCATTTAGAGGAAGTACGCAGCCGCTGTCTCTTATACACATCT48640.1234803589054116No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)