FastQCFastQC Report
Fri 25 Oct 2024
000000000-GM647_l01_n01_P_HSD_ATH872.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-GM647_l01_n01_P_HSD_ATH872.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1240
Sequences flagged as poor quality0
Sequence length301
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCGGCTGACCGTCTGATCGCCAACTGAGATAACAGACAGAAACAGACA40.3225806451612903No Hit
TCCCGGCTGATCGTCTGATCGCCATAGTTATCATGTGTTCCCTAGCTTCT30.24193548387096775No Hit
TCCCGGCTGATCGTCTGATTGCCATAGTTATCATGTGTTCCCTAGCTTCT20.16129032258064516No Hit
TCCCGGCCGATCGTCTGATCGCCAATATACTGGCTGGTGAACGCGACATC20.16129032258064516No Hit
TTCCGGCTGACCGTCTGATTGCCAACGCGCTGGTGGCGGCCTACATCTTC20.16129032258064516No Hit
TCCCGGCCGACCGCCTGATCGCCAGTGGAAACAAACCTTTTGTCTTGTAT20.16129032258064516No Hit
TTCCGGCTGATCGTCTGATTGCCACTACCTTGGATTACATTTTATTTGAC20.16129032258064516No Hit
TTCCGGCTGACCGTCTGATTGCCAACTGAGATAACAGACAGAAACAGACA20.16129032258064516No Hit
TTCCGGCTGACCGTCTGATTGCCAATATACTGGCTGGTGAACGCGACATC20.16129032258064516No Hit
TTCCGGCCGATCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT20.16129032258064516No Hit
TTCCGGCTGATCGTCTGATCGCCACACAAAGCGACTGGTTGTTAGCTCAG20.16129032258064516No Hit
TTCCGGCTGACCGTCTGATCGCCAGCCCCTCGACCGCACCGAGCACGGTC20.16129032258064516No Hit
TTCCGGCTGATCGTCTGATTGCCAACTGAGATAACAGACAGAAACAGACA20.16129032258064516No Hit
TTCCGGCCGACCGTCTGATTGCCAGCGTGCCCTGGCTGATGGTCCACGGT20.16129032258064516No Hit
TCCCGGCTGACCGTCTGATCGCCAATCCGGGTTGTTATCCGACCACCATG20.16129032258064516No Hit
TTCCGGCTGACCGCCTGATCGCCAGTCTCGAGGTGCCGATGATCCTGCTG20.16129032258064516No Hit
TTCCGGCCGACCGTCTGATCGCCACTACCTTGGATTACATTTTATTTGAC20.16129032258064516No Hit
TCCCGGCTGATCGCCTGATTGCCATTGAAGGCACCAAGCAGATGATCGGC20.16129032258064516No Hit
TCCCGGCCGACCGCCTGATCGCCCTGCGGCTTCTGCGCCAGGAACCCGGC20.16129032258064516No Hit
TCCCGGCTGATCGCCTGATTGCCAACTGAGATAACAGACAGAAACAGACA20.16129032258064516No Hit
TCCCGGCCGACCGCCTGATCGCCATAGTTATCATGTGTTCCCTAGCTTCT20.16129032258064516No Hit
TCCCGGCTGATCGCCTGATCGCCATTGGTCGAAATATTCGACGTCATGGG20.16129032258064516No Hit
TCCCGGCCGATCGTCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG20.16129032258064516No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)