FastQCFastQC Report
Fri 25 Oct 2024
000000000-GM647_l01_n01_P_HSD_ATH3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-GM647_l01_n01_P_HSD_ATH3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9106
Sequences flagged as poor quality0
Sequence length301
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCGGCTGATCGTCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG220.24159894575005492No Hit
TCCCGGCTGACCGTCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG190.2086536349659565No Hit
TTCCGGCTGACCGCCTGATCGCCAACGCCGTCATCCTGTGGATCGGCCTG190.2086536349659565No Hit
TTCCGGCTGATCGCCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG190.2086536349659565No Hit
TTCCGGCTGATCGTCTGATTGCCACCGACGCCAAGGGCGCGGCCTACGGC190.2086536349659565No Hit
TCCCGGCTGACCGTCTGATCGCCAACGCCGTCATCCTGTGGATCGGCCTG190.2086536349659565No Hit
TCCCGGCCGATCGTCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG190.2086536349659565No Hit
TTCCGGCTGATCGCCTGATCGCCAACGCCGTCATCCTGTGGATCGGCCTG180.1976718647045904No Hit
TTCCGGCTGACCGCCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT180.1976718647045904No Hit
TCCCGGCTGACCGCCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT170.18669009444322424No Hit
TTCCGGCTGACCGTCTGATCGCCACCGACGCCAAGGGCGCGGCCTACGGC170.18669009444322424No Hit
TTCCGGCCGATCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT170.18669009444322424No Hit
TTCCGGCTGACCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT160.1757083241818581No Hit
TTCCGGCTGACCGTCTGATTGCCACCGACGCCAAGGGCGCGGCCTACGGC160.1757083241818581No Hit
TCCCGGCTGATCGTCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG160.1757083241818581No Hit
TCCCGGCCGATCGTCTGATTGCCACCGACGCCAAGGGCGCGGCCTACGGC160.1757083241818581No Hit
TTCCGGCCGATCGTCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG160.1757083241818581No Hit
TTCCGGCCGACCGCCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG160.1757083241818581No Hit
TTCCGGCTGATCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT160.1757083241818581No Hit
TCCCGGCTGATCGTCTGATCGCCAACGCCGTCATCCTGTGGATCGGCCTG160.1757083241818581No Hit
TTCCGGCTGATCGTCTGATTGCCATGTCACTTTCGTTCAAGACGACGCCG150.16472655392049199No Hit
TCCCGGCTGATCGCCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC150.16472655392049199No Hit
TCCCGGCCGATCGTCTGATCGCCAACGCCGTCATCCTGTGGATCGGCCTG150.16472655392049199No Hit
TCCCGGCTGATCGCCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT150.16472655392049199No Hit
TTCCGGCCGACCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT150.16472655392049199No Hit
TCCCGGCTGACCGCCTGATCGCCAACGCCGTCATCCTGTGGATCGGCCTG150.16472655392049199No Hit
TTCCGGCCGATCGTCTGATCGCCAACGCCGTCATCCTGTGGATCGGCCTG150.16472655392049199No Hit
TCCCGGCTGATCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT150.16472655392049199No Hit
TTCCGGCCGACCGTCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG140.15374478365912583No Hit
TTCCGGCTGACCGTCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG140.15374478365912583No Hit
TTCCGGCTGATCGCCTGATTGCCACCGACGCCAAGGGCGCGGCCTACGGC140.15374478365912583No Hit
TTCCGGCTGATCGTCTGATCGCCAACGCCGTCATCCTGTGGATCGGCCTG140.15374478365912583No Hit
TCCCGGCTGATCGCCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG140.15374478365912583No Hit
TCCCGGCTGACCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT140.15374478365912583No Hit
TTCCGGCCGACCGTCTGATCGCCAACGCCGTCATCCTGTGGATCGGCCTG140.15374478365912583No Hit
TCCCGGCCGATCGCCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC130.14276301339775974No Hit
TTCCGGCTGACCGCCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG130.14276301339775974No Hit
TCCCGGCCGACCGTCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG130.14276301339775974No Hit
TCCCGGCTGACCGTCTGATCGCCACCGACGCCAAGGGCGCGGCCTACGGC130.14276301339775974No Hit
TTCCGGCCGATCGTCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC130.14276301339775974No Hit
TTCCGGCTGATCGCCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT130.14276301339775974No Hit
TCCCGGCTGATCGCCTGATTGCCACCGACGCCAAGGGCGCGGCCTACGGC130.14276301339775974No Hit
TCCCGGCTGACCGTCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC130.14276301339775974No Hit
TTCCGGCCGACCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT130.14276301339775974No Hit
TCCCGGCTGATCGCCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT130.14276301339775974No Hit
TTCCGGCCGATCGCCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT130.14276301339775974No Hit
TTCCGGCTGATCGTCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC120.13178124313639358No Hit
TTCCGGCCGATCGCCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC120.13178124313639358No Hit
TCCCGGCCGACCGTCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC120.13178124313639358No Hit
TTCCGGCTGACCGTCTGATCGCCAACGCCGTCATCCTGTGGATCGGCCTG120.13178124313639358No Hit
TCCCGGCTGATCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT120.13178124313639358No Hit
TCCCGGCTGACCGCCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC120.13178124313639358No Hit
TTCCGGCTGACCGCCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT120.13178124313639358No Hit
TTCCGGCTGACCGCCTGATCGCCACCGACGCCAAGGGCGCGGCCTACGGC120.13178124313639358No Hit
TTCCGGCCGATCGCCTGATCGCCAACGCCGTCATCCTGTGGATCGGCCTG120.13178124313639358No Hit
TCCCGGCTGACCGCCTGATTGCCACCGACGCCAAGGGCGCGGCCTACGGC120.13178124313639358No Hit
TCCCGGCCGATCGCCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT120.13178124313639358No Hit
TTCCGGCTGATCGCCTGATTGCCATGTCACTTTCGTTCAAGACGACGCCG110.12079947287502746No Hit
TCCCGGCCGATCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT110.12079947287502746No Hit
TCCCGGCTGACCGTCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG110.12079947287502746No Hit
TTCCGGCCGATCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT110.12079947287502746No Hit
TTCCGGCTGATCGTCTGATCGCCACCGACGCCAAGGGCGCGGCCTACGGC110.12079947287502746No Hit
TTCCGGCTGATCGTCTGATTGCCAATGCAGAGGTGCCGATGATTCTGCTG110.12079947287502746No Hit
TCCCGGCTGATCGTCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC110.12079947287502746No Hit
TTCCGGCCGACCGTCTGATCGCCACCGACGCCAAGGGCGCGGCCTACGGC110.12079947287502746No Hit
TTCCGGCCGACCGCCTGATTGCCACCGACGCCAAGGGCGCGGCCTACGGC110.12079947287502746No Hit
TCCCGGCCGACCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT110.12079947287502746No Hit
TCCCGGCTGATCGCCTGATCGCCACCGACGCCAAGGGCGCGGCCTACGGC110.12079947287502746No Hit
TTCCGGCTGATCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT110.12079947287502746No Hit
TCCCGGCCGACCGCCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG100.10981770261366132No Hit
TCCCGGCTGACCGCCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG100.10981770261366132No Hit
TCCCGGCCGATCGCCTGATCGCCACCGACGCCAAGGGCGCGGCCTACGGC100.10981770261366132No Hit
TCCCGGCTGACCGTCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC100.10981770261366132No Hit
TTCCGGCTGACCGCCTGATTGCCACCGACGCCAAGGGCGCGGCCTACGGC100.10981770261366132No Hit
TTCCGGCTGATCGCCTGATCGCCACCGACGCCAAGGGCGCGGCCTACGGC100.10981770261366132No Hit
TTCCGGCTGATCGCCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC100.10981770261366132No Hit
TCCCGGCTGATCGCCTGATCGCCAACGCCGTCATCCTGTGGATCGGCCTG100.10981770261366132No Hit
TCCCGGCTGATCGTCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG100.10981770261366132No Hit
TTCCGGCCGATCGCCTGATTGCCACCGACGCCAAGGGCGCGGCCTACGGC100.10981770261366132No Hit
TCCCGGCCGACCGCCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC100.10981770261366132No Hit
TCCCGGCTGACCGTCTGATCGCCAATGCAGAGGTGCCCATGATCCTGCTG100.10981770261366132No Hit
TTCCGGCCGATCGCCTGATTGCCAACGCCGTCATCCTGTGGATCGGCCTG100.10981770261366132No Hit
TTCCGGCCGATCGTCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG100.10981770261366132No Hit
TTCCGGCCGATCGTCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC100.10981770261366132No Hit
TCCCGGCCGATCGTCTGATTGCCATGTCACTTTCGTTCAAGACGACGCCG100.10981770261366132No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)