FastQCFastQC Report
Fri 25 Oct 2024
000000000-GM647_l01_n01_P_HSD_ATH38.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-GM647_l01_n01_P_HSD_ATH38.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11683
Sequences flagged as poor quality0
Sequence length301
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCGGCTGATCGTCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC880.7532311906188479No Hit
TTCCGGCTGACCGTCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG750.641958401095609No Hit
TTCCGGCTGATCGTCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG750.641958401095609No Hit
TTCCGGCTGACCGTCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG740.6333989557476676No Hit
TCCCGGCTGATCGTCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG730.6248395103997261No Hit
TTCCGGCTGACCGTCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC700.5991611743559018No Hit
TTCCGGCTGATCGCCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC690.5906017290079603No Hit
TTCCGGCTGATCGCCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG690.5906017290079603No Hit
TCCCGGCTGATCGTCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC650.5563639476161945No Hit
TCCCGGCTGACCGTCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG640.5478045022682531No Hit
TCCCGGCTGATCGCCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG630.5392450569203115No Hit
TTCCGGCTGATCGCCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG620.5306856115723702No Hit
TTCCGGCTGACCGTCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC590.5050072755285457No Hit
TTCCGGCCGATCGTCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG570.48788838483266284No Hit
TTCCGGCCGATCGTCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG570.48788838483266284No Hit
TCCCGGCCGACCGCCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG570.48788838483266284No Hit
TCCCGGCTGATCGCCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC560.4793289394847214No Hit
TCCCGGCTGACCGTCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC560.4793289394847214No Hit
TCCCGGCTGACCGTCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG560.4793289394847214No Hit
TCCCGGCTGACCGTCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC540.4622100487888385No Hit
TCCCGGCTGACCGCCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG540.4622100487888385No Hit
TCCCGGCTGATCGCCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG530.453650603440897No Hit
TTCCGGCTGACCGCCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC520.4450911580929555No Hit
TTCCGGCCGACCGCCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC520.4450911580929555No Hit
TTCCGGCTGACCGCCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG520.4450911580929555No Hit
TCCCGGCCGACCGTCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG510.4365317127450141No Hit
TTCCGGCTGATCGTCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG500.4279722673970727No Hit
TCCCGGCTGACCGCCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG500.4279722673970727No Hit
TTCCGGCTGATCGTCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC500.4279722673970727No Hit
TTCCGGCCGATCGTCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC500.4279722673970727No Hit
TCCCGGCCGATCGTCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG500.4279722673970727No Hit
TTCCGGCTGATCGCCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG500.4279722673970727No Hit
TCCCGGCCGATCGTCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG490.4194128220491312No Hit
TTCCGGCTGATCGTCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG490.4194128220491312No Hit
TTCCGGCCGACCGTCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG490.4194128220491312No Hit
TCCCGGCCGATCGCCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG490.4194128220491312No Hit
TTCCGGCCGATCGCCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC480.41085337670118977No Hit
TTCCGGCCGATCGCCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG480.41085337670118977No Hit
TTCCGGCTGACCGCCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG480.41085337670118977No Hit
TCCCGGCTGATCGTCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC480.41085337670118977No Hit
TTCCGGCCGATCGTCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG480.41085337670118977No Hit
TCCCGGCCGATCGCCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC470.40229393135324837No Hit
TTCCGGCCGACCGTCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC470.40229393135324837No Hit
TCCCGGCCGACCGTCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG470.40229393135324837No Hit
TCCCGGCTGATCGCCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC460.39373448600530686No Hit
TCCCGGCCGACCGTCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC450.3851750406573654No Hit
TCCCGGCTGATCGCCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG450.3851750406573654No Hit
TCCCGGCTGACCGCCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC450.3851750406573654No Hit
TCCCGGCTGATCGTCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG440.37661559530942396No Hit
TCCCGGCTGACCGTCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG440.37661559530942396No Hit
TTCCGGCCGACCGCCTGATTGCCAATCCTGGTTGCTATCCGACCACGATG440.37661559530942396No Hit
TTCCGGCTGATCGCCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG430.3680561499614825No Hit
TCCCGGCTGACCGCCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC430.3680561499614825No Hit
TCCCGGCCGACCGCCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG430.3680561499614825No Hit
TCCCGGCCGACCGCCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC420.35949670461354105No Hit
TTCCGGCCGACCGCCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG420.35949670461354105No Hit
TCCCGGCCGATCGTCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC410.3509372592655996No Hit
TTCCGGCCGATCGCCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG410.3509372592655996No Hit
TTCCGGCTGATCGTCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG410.3509372592655996No Hit
TTCCGGCTGACCGCCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC410.3509372592655996No Hit
TTCCGGCTGATCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT410.3509372592655996No Hit
TTCCGGCCGATCGCCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC400.34237781391765815No Hit
TCCCGGCCGACCGCCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC400.34237781391765815No Hit
TTCCGGCTGACCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT400.34237781391765815No Hit
TTCCGGCCGATCGCCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG390.3338183685697167No Hit
TCCCGGCTGATCGTCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG380.3252589232217752No Hit
TCCCGGCTGACCGCCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG380.3252589232217752No Hit
TCCCGGCCGATCGCCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG360.30814003252589234No Hit
TTCCGGCTGACCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT360.30814003252589234No Hit
TCCCGGCCGATCGTCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC360.30814003252589234No Hit
TTCCGGCTGACCGCCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG360.30814003252589234No Hit
TTCCGGCCGACCGTCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG360.30814003252589234No Hit
TTCCGGCTGATCGCCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT360.30814003252589234No Hit
TTCCGGCTGACCGCCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG360.30814003252589234No Hit
TTCCGGCTGACCGTCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG360.30814003252589234No Hit
TCCCGGCCGATCGCCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG350.2995805871779509No Hit
TCCCGGCCGATCGCCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC340.2910211418300094No Hit
TCCCGGCCGACCGTCTGATTGCCATTTTACATGGTCTTGAAGCCCTCGAC340.2910211418300094No Hit
TCCCGGCCGACCGCCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG340.2910211418300094No Hit
TCCCGGCTGACCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT340.2910211418300094No Hit
TTCCGGCTGACCGTCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG330.282461696482068No Hit
TTCCGGCTGATCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT330.282461696482068No Hit
TCCCGGCTGACCGTCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG330.282461696482068No Hit
TTCCGGCCGATCGTCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC330.282461696482068No Hit
TTCCGGCCGACCGTCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC320.27390225113412653No Hit
TCCCGGCTGATCGTCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG320.27390225113412653No Hit
TTCCGGCCGACCGTCTGATCGCCAATCCTGGTTGCTATCCGACCACGATG320.27390225113412653No Hit
TTCCGGCCGACCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT320.27390225113412653No Hit
TTCCGGCTGATCGCCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC310.2653428057861851No Hit
TCCCGGCCGACCGTCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG310.2653428057861851No Hit
TCCCGGCCGACCGTCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG310.2653428057861851No Hit
TCCCGGCTGATCGCCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG300.25678336043824357No Hit
TTCCGGCCGATCGTCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG300.25678336043824357No Hit
TCCCGGCCGATCGCCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG300.25678336043824357No Hit
TCCCGGCTGATCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT300.25678336043824357No Hit
TTCCGGCCGATCGCCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT300.25678336043824357No Hit
TTCCGGCCGACCGCCTGATCGCCATTTTACATGGTCTTGAAGCCCTCGAC300.25678336043824357No Hit
TTCCGGCCGACCGCCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG290.24822391509030217No Hit
TCCCGGCTGATCGCCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT280.2396644697423607No Hit
TTCCGGCTGACCGCCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT280.2396644697423607No Hit
TTCCGGCCGATCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT270.23110502439441924No Hit
TTCCGGCCGACCGTCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG270.23110502439441924No Hit
TCCCGGCTGACCGCCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT270.23110502439441924No Hit
TTCCGGCCGATCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT270.23110502439441924No Hit
TTCCGGCTGATCGCCTGATTGCCATGTCACTTTCGTTCAAGACGACGCCG260.22254557904647776No Hit
TTCCGGCTGATCGCCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT260.22254557904647776No Hit
TCCCGGCTGACCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT260.22254557904647776No Hit
TCCCGGCTGATCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT260.22254557904647776No Hit
TCCCGGCCGATCGTCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG260.22254557904647776No Hit
TCCCGGCTGATCGTCTGATTGCCATGTCACTTTCGTTCAAGACGACGCCG250.21398613369853636No Hit
TCCCGGCCGATCGCCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT250.21398613369853636No Hit
TCCCGGCCGATCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT240.20542668835059488No Hit
TCCCGGCCGACCGCCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG240.20542668835059488No Hit
TCCCGGCCGACCGCCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT240.20542668835059488No Hit
TTCCGGCTGATCGTCTGATTGCCATGTCACTTTCGTTCAAGACGACGCCG230.19686724300265343No Hit
TTCCGGCCGACCGCCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG230.19686724300265343No Hit
TCCCGGCTGACCGCCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG230.19686724300265343No Hit
TCCCGGCCGATCGTCTGATTGCCAACGTCAATGGCGTCATGAACGCCGTG230.19686724300265343No Hit
TTCCGGCTGACCGCCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG220.18830779765471198No Hit
TTCCGGCTGACCGCCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT220.18830779765471198No Hit
TTCCGGCTGACCGCCTGATTGCCATGTCACTTTCGTTCAAGACGACGCCG220.18830779765471198No Hit
TTCCGGCCGATCGCCTGATCGCCAACGTCAATGGCGTCATGAACGCCGTG210.17974835230677053No Hit
TCCCGGCTGACCGCCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT210.17974835230677053No Hit
TCCCGGCTGACCGCCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG200.17118890695882907No Hit
TTCCGGCCGACCGCCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT200.17118890695882907No Hit
TCCCGGCTGACCGTCTGATTGCCATGTCACTTTCGTTCAAGACGACGCCG200.17118890695882907No Hit
TTCCGGCCGATCGTCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG200.17118890695882907No Hit
TCCCGGCTGACCGTCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG190.1626294616108876No Hit
TTCCGGCTGATCGTCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG190.1626294616108876No Hit
TTCCGGCTGACCGTCTGATTGCCATGTCACTTTCGTTCAAGACGACGCCG190.1626294616108876No Hit
TTCCGGCCGACCGCCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG180.15407001626294617No Hit
TCCCGGCTGATCGCCTGATTGCCATGTCACTTTCGTTCAAGACGACGCCG180.15407001626294617No Hit
TCCCGGCCGATCGTCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG180.15407001626294617No Hit
TCCCGGCTGATCGTCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG180.15407001626294617No Hit
TCCCGGCTGATCGCCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG180.15407001626294617No Hit
TTCCGGCCGATCGCCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT180.15407001626294617No Hit
TTCCGGCTGACCGTCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG170.1455105709150047No Hit
TCCCGGCCGACCGTCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG170.1455105709150047No Hit
TCCCGGCCGACCGCCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT170.1455105709150047No Hit
TCCCGGCTGACCGCCTGATTGCCATGTCACTTTCGTTCAAGACGACGCCG160.13695112556706326No Hit
TCCCGGCCGACCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT160.13695112556706326No Hit
TCCCGGCTGATCGCCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT160.13695112556706326No Hit
TTCCGGCCGACCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT150.12839168021912178No Hit
TCCCGGCCGATCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGT150.12839168021912178No Hit
TCCCGGCCGACCGTCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT150.12839168021912178No Hit
TCCCGGCCGACCGCCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG140.11983223487118035No Hit
TTCCGGCTGACCGCCTGATTGCCAACGTCAACGGCGTCATGAATGCGGTG140.11983223487118035No Hit
TCCCGGCCGACCGTCTGATTGCCATGTCACTTTCGTTCAAGACGACGCCG140.11983223487118035No Hit
TTCCGGCCGACCGTCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG140.11983223487118035No Hit
TTCCGGCCGATCGCCTGATTGCCATGTCACTTTCGTTCAAGACGACGCCG140.11983223487118035No Hit
TCCCGGCCGATCGCCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT140.11983223487118035No Hit
TTCCGGCTGATCGCCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGC130.11127278952323888No Hit
TTCCGGCCGACCGCCTGATCGCCAAGAAAACAAGACAGCTCAAAACCAGT130.11127278952323888No Hit
TTCCGGCCGATCGCCTGATTGCCAATCCGGGTTGCTATCCGACCACGATG130.11127278952323888No Hit
TTCCGGCTGATCGCCTGATCGCCATGTCACTTTCGTTCAAGACGACGCCG130.11127278952323888No Hit
TCCCGGCCGATCGTCTGATTGCCATGTCACTTTCGTTCAAGACGACGCCG130.11127278952323888No Hit
TTCCGGCTGATCGCCTGATCGCCAATCCGGGTTGCTATCCGACCACGATG120.10271334417529744No Hit
TTCCGGCTGATCGTCTGATTGCCAATCCGGGTTGCTATCCGACCACGATG120.10271334417529744No Hit
TCCCGGCTGATCGCCTGATCGCCAACGTCAACGGCGTCATGAATGCGGTG120.10271334417529744No Hit
TTCCGGCTGATCGTCTGATTGCCATGTCACTTTCGTTCAAGACTACACCG120.10271334417529744No Hit
TTCCGGCCGATCGTCTGATTGCCAATCCGGGTTGCTATCCGACCACGATG120.10271334417529744No Hit
TTCCGGCTGATCGTCTGATTGCCAAGAAAACAAGACAGCTCAAAACCAGC120.10271334417529744No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)