[2024-10-22 10:26:32,463] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-10-22 10:26:32,463] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-10-22 10:26:32,463] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-10-22 10:26:32,466] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-10-22 10:26:32,466] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-10-22 10:26:32,466] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-10-22 10:26:32,501] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-10-22 10:26:32,501] multiqc [INFO ] This is MultiQC v1.9 [2024-10-22 10:26:32,501] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-10-22 10:26:32,501] multiqc [DEBUG ] Working dir : /scratch/gencore/GENEFLOW/work/nf/74/a253b194422ab424a341396c1332cd/1 [2024-10-22 10:26:32,501] multiqc [INFO ] Template : default [2024-10-22 10:26:32,501] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-10-22 10:26:32,501] multiqc [INFO ] Searching : /scratch/gencore/GENEFLOW/work/nf/74/a253b194422ab424a341396c1332cd/1 [2024-10-22 10:26:32,502] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-10-22 10:26:32,502] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-52535174/tmpo5b51tbj [2024-10-22 10:26:32,612] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi185_fastqc.html [2024-10-22 10:26:32,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi185_fastqc.html [2024-10-22 10:26:32,640] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern 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File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_undetermined_fastqc.html [2024-10-22 10:26:37,007] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_ATH89_fastqc.html [2024-10-22 10:26:37,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_ATH89_fastqc.html [2024-10-22 10:26:37,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi104_fastqc.html [2024-10-22 10:26:37,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi104_fastqc.html [2024-10-22 10:26:37,053] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_ATH19_fastqc.html [2024-10-22 10:26:37,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_ATH19_fastqc.html [2024-10-22 10:26:37,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi139_fastqc.html [2024-10-22 10:26:37,079] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi139_fastqc.html [2024-10-22 10:26:37,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi125_fastqc.html [2024-10-22 10:26:37,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi125_fastqc.html [2024-10-22 10:26:37,124] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi186_fastqc.html [2024-10-22 10:26:37,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi186_fastqc.html [2024-10-22 10:26:37,147] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi146_fastqc.html [2024-10-22 10:26:37,149] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi146_fastqc.html [2024-10-22 10:26:37,170] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi132_fastqc.html [2024-10-22 10:26:37,172] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi132_fastqc.html [2024-10-22 10:26:37,193] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_ATH80_fastqc.html [2024-10-22 10:26:37,195] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_ATH80_fastqc.html [2024-10-22 10:26:37,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_ATH44_fastqc.html [2024-10-22 10:26:37,218] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_ATH44_fastqc.html [2024-10-22 10:26:37,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi116_fastqc.html [2024-10-22 10:26:37,242] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GM4WJ_l01_n01_HSD_Chi116_fastqc.html [2024-10-22 10:26:37,704] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-10-22 10:26:37,706] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-10-22 10:26:37,712] multiqc.modules.custom_content.custom_content [WARNING] Not able to parse custom data in undetermined_barcodes_mqc.txt [2024-10-22 10:26:37,803] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 196 samples (table) [2024-10-22 10:26:37,805] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-10-22 10:26:37,810] multiqc [DEBUG ] No samples found: conpair [2024-10-22 10:26:37,815] multiqc [DEBUG ] No samples found: peddy [2024-10-22 10:26:37,820] multiqc [DEBUG ] No samples found: somalier [2024-10-22 10:26:37,825] multiqc [DEBUG ] No samples found: methylQA [2024-10-22 10:26:37,834] multiqc [DEBUG ] No samples found: mosdepth [2024-10-22 10:26:37,839] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-10-22 10:26:37,842] multiqc [DEBUG ] No samples found: qualimap [2024-10-22 10:26:37,848] multiqc [DEBUG ] No samples found: preseq [2024-10-22 10:26:37,853] multiqc [DEBUG ] No samples found: quast [2024-10-22 10:26:37,858] multiqc [DEBUG ] No samples found: qorts [2024-10-22 10:26:37,863] multiqc [DEBUG ] No samples found: rna_seqc [2024-10-22 10:26:37,868] multiqc [DEBUG ] No samples found: rockhopper [2024-10-22 10:26:37,873] multiqc [DEBUG ] No samples found: rsem [2024-10-22 10:26:37,885] multiqc [DEBUG ] No samples found: rseqc [2024-10-22 10:26:37,890] multiqc [DEBUG ] No samples found: busco [2024-10-22 10:26:37,895] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-10-22 10:26:37,900] multiqc [DEBUG ] No samples found: disambiguate [2024-10-22 10:26:37,905] multiqc [DEBUG ] No samples found: supernova [2024-10-22 10:26:37,919] multiqc [DEBUG ] No samples found: deeptools [2024-10-22 10:26:37,924] multiqc [DEBUG ] No samples found: sargasso [2024-10-22 10:26:37,929] multiqc [DEBUG ] No samples found: verifybamid [2024-10-22 10:26:37,934] multiqc [DEBUG ] No samples found: mirtrace [2024-10-22 10:26:37,939] multiqc [DEBUG ] No samples found: happy [2024-10-22 10:26:37,944] multiqc [DEBUG ] No samples found: mirtop [2024-10-22 10:26:37,951] multiqc [DEBUG ] No samples found: homer [2024-10-22 10:26:37,956] multiqc [DEBUG ] No samples found: macs2 [2024-10-22 10:26:37,960] multiqc [DEBUG ] No samples found: theta2 [2024-10-22 10:26:37,965] multiqc [DEBUG ] No samples found: snpeff [2024-10-22 10:26:37,972] multiqc [DEBUG ] No samples found: gatk [2024-10-22 10:26:37,977] multiqc [DEBUG ] No samples found: htseq [2024-10-22 10:26:37,983] multiqc [DEBUG ] No samples found: bcftools [2024-10-22 10:26:37,988] multiqc [DEBUG ] No samples found: featureCounts [2024-10-22 10:26:37,994] multiqc [DEBUG ] No samples found: fgbio [2024-10-22 10:26:38,009] multiqc [DEBUG ] No samples found: dragen [2024-10-22 10:26:38,014] multiqc [DEBUG ] No samples found: dedup [2024-10-22 10:26:38,019] multiqc [DEBUG ] No samples found: damageprofiler [2024-10-22 10:26:38,043] multiqc [DEBUG ] No samples found: biobambam2 [2024-10-22 10:26:38,048] multiqc [DEBUG ] No samples found: mtnucratio [2024-10-22 10:26:38,051] multiqc [DEBUG ] No samples found: picard [2024-10-22 10:26:38,056] multiqc [DEBUG ] No samples found: prokka [2024-10-22 10:26:38,061] multiqc [DEBUG ] No samples found: samblaster [2024-10-22 10:26:38,071] multiqc [DEBUG ] No samples found: samtools [2024-10-22 10:26:38,077] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-10-22 10:26:38,082] multiqc [DEBUG ] No samples found: bamtools [2024-10-22 10:26:38,087] multiqc [DEBUG ] No samples found: jellyfish [2024-10-22 10:26:38,097] multiqc [DEBUG ] No samples found: vcftools [2024-10-22 10:26:38,102] multiqc [DEBUG ] No samples found: longranger [2024-10-22 10:26:38,107] multiqc [DEBUG ] No samples found: stacks [2024-10-22 10:26:38,112] multiqc [DEBUG ] No samples found: varscan2 [2024-10-22 10:26:38,128] multiqc [DEBUG ] No samples found: bbmap [2024-10-22 10:26:38,138] multiqc [DEBUG ] No samples found: bismark [2024-10-22 10:26:38,144] multiqc [DEBUG ] No samples found: biscuit [2024-10-22 10:26:38,150] multiqc [DEBUG ] No samples found: hicexplorer [2024-10-22 10:26:38,156] multiqc [DEBUG ] No samples found: hicup [2024-10-22 10:26:38,161] multiqc [DEBUG ] No samples found: hicpro [2024-10-22 10:26:38,166] multiqc [DEBUG ] No samples found: salmon [2024-10-22 10:26:38,172] multiqc [DEBUG ] No samples found: kallisto [2024-10-22 10:26:38,178] multiqc [DEBUG ] No samples found: slamdunk [2024-10-22 10:26:38,183] multiqc [DEBUG ] No samples found: star [2024-10-22 10:26:38,189] multiqc [DEBUG ] No samples found: hisat2 [2024-10-22 10:26:38,194] multiqc [DEBUG ] No samples found: tophat [2024-10-22 10:26:38,199] multiqc [DEBUG ] No samples found: bowtie2 [2024-10-22 10:26:38,204] multiqc [DEBUG ] No samples found: bowtie1 [2024-10-22 10:26:38,210] multiqc [DEBUG ] No samples found: snpsplit [2024-10-22 10:26:38,214] multiqc [DEBUG ] No samples found: kat [2024-10-22 10:26:38,219] multiqc [DEBUG ] No samples found: leehom [2024-10-22 10:26:38,224] multiqc [DEBUG ] No samples found: adapterRemoval [2024-10-22 10:26:38,229] multiqc [DEBUG ] No samples found: clipandmerge [2024-10-22 10:26:38,234] multiqc [DEBUG ] No samples found: cutadapt [2024-10-22 10:26:38,239] multiqc [DEBUG ] No samples found: flexbar [2024-10-22 10:26:38,244] multiqc [DEBUG ] No samples found: kaiju [2024-10-22 10:26:38,249] multiqc [DEBUG ] No samples found: kraken [2024-10-22 10:26:38,254] multiqc [DEBUG ] No samples found: malt [2024-10-22 10:26:38,259] multiqc [DEBUG ] No samples found: trimmomatic [2024-10-22 10:26:38,264] multiqc [DEBUG ] No samples found: sickle [2024-10-22 10:26:38,270] multiqc [DEBUG ] No samples found: skewer [2024-10-22 10:26:38,274] multiqc [DEBUG ] No samples found: sortmerna [2024-10-22 10:26:38,279] multiqc [DEBUG ] No samples found: biobloomtools [2024-10-22 10:26:38,284] multiqc [DEBUG ] No samples found: fastq_screen [2024-10-22 10:26:38,289] multiqc [DEBUG ] No samples found: afterqc [2024-10-22 10:26:38,294] multiqc [DEBUG ] No samples found: fastp [2024-10-22 10:26:38,557] multiqc.modules.fastqc.fastqc [INFO ] Found 196 reports [2024-10-22 10:26:38,560] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH7' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi168' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi187' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi160' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi155' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH90' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi137' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi114' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH44' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi190' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi110' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH38' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH57' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi123' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH30' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH68' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH41' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH72' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH5' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi172' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi117' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH32' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi128' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH76' [2024-10-22 10:26:38,561] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi151' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi107' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH47' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH83' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi146' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH873' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi149' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH872' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH56' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi157' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH15' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH36' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH29' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi112' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi142' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi121' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi140' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH81' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi99' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi189' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi174' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH75' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH35' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH13' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi118' [2024-10-22 10:26:38,562] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi176' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH96' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH91' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH26' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH10' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi126' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi147' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi184' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH52' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH12' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi135' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi102' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH92' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi143' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi139' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi145' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi166' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH3' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH62' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi164' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi131' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi115' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi105' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi154' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH84' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH86' [2024-10-22 10:26:38,563] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH42' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH69' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH77' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi156' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH51' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH14' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH18' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi108' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi120' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH74' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH55' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi152' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH64' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH16' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi97' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi106' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi185' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH80' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH28' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH45' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi169' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH6' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH49' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi125' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi148' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi191' [2024-10-22 10:26:38,564] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH70' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi178' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi192' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH21' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH71' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH88' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH53' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi116' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH24' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi124' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH43' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi158' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi161' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH34' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi119' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH19' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH73' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH33' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi122' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi183' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH82' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi181' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH39' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi141' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi111' [2024-10-22 10:26:38,565] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH46' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH60' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi162' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi129' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi170' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH63' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH61' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH40' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi127' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_undetermined' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH79' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH1' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi101' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH37' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH66' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH20' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH95' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH22' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH78' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi153' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi150' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH9' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH50' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi188' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH31' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH874' [2024-10-22 10:26:38,566] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi171' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi98' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH94' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi109' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH17' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi113' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi159' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH23' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi138' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi134' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH67' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi177' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi175' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi173' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi136' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi103' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi133' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi179' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi163' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi104' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH93' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH8' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH54' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH2' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi165' [2024-10-22 10:26:38,567] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH58' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH89' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH25' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi100' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH4' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi132' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH59' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi144' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi167' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi186' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH11' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH85' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi182' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH27' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi180' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH65' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH87' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_ATH48' [2024-10-22 10:26:38,568] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-GM4WJ_l01_n01_HSD_Chi130' [2024-10-22 10:26:49,055] multiqc.modules.fastqc.fastqc [DEBUG ] sequence_quality not found in FastQC reports [2024-10-22 10:26:49,055] multiqc.modules.fastqc.fastqc [DEBUG ] per_seq_quality not found in FastQC reports [2024-10-22 10:26:51,957] multiqc.modules.fastqc.fastqc [DEBUG ] adapter_content not found in FastQC reports [2024-10-22 10:26:51,969] multiqc [DEBUG ] No samples found: pycoqc [2024-10-22 10:26:51,974] multiqc [DEBUG ] No samples found: minionqc [2024-10-22 10:26:51,979] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-10-22 10:26:51,985] multiqc [DEBUG ] No samples found: clusterflow [2024-10-22 10:26:51,990] multiqc [DEBUG ] No samples found: bcl2fastq [2024-10-22 10:26:51,995] multiqc [DEBUG ] No samples found: interop [2024-10-22 10:26:52,000] multiqc [DEBUG ] No samples found: ivar [2024-10-22 10:26:52,005] multiqc [DEBUG ] No samples found: flash [2024-10-22 10:26:52,010] multiqc [DEBUG ] No samples found: seqyclean [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-10-22 10:26:52,010] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-10-22 10:26:52,011] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-10-22 10:26:52,011] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-10-22 10:26:52,011] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-10-22 10:26:52,011] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-10-22 10:26:52,011] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-10-22 10:26:52,232] multiqc [INFO ] Compressing plot data [2024-10-22 10:26:52,285] multiqc [INFO ] Report : multiqc_report.html [2024-10-22 10:26:52,286] multiqc [INFO ] Data : multiqc_data [2024-10-22 10:26:52,286] multiqc [DEBUG ] Moving data file from '/state/partition1/job-52535174/tmpo5b51tbj/multiqc_data' to '/scratch/gencore/GENEFLOW/work/nf/74/a253b194422ab424a341396c1332cd/1/multiqc_data' [2024-10-22 10:26:52,422] multiqc [INFO ] MultiQC complete