FastQCFastQC Report
Wed 15 May 2024
000000000-GLMFC_l01.1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-GLMFC_l01.1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3753407
Sequences flagged as poor quality0
Sequence length301
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG214824457.234507209050335No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG1598784.25954339617313No Hit
GGCTTGGTCATTTAGAGGAAGTAGAAGTCGTAACAAGGTTTCCGTAGGTG1250863.3325988894889367No Hit
GGCTTGGTCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTG843322.246812029710607No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG430941.1481302187585838No Hit
GGCTTGATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTG195590.5210998967071784No Hit
CTGTAAGGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG100680.26823629838171026No Hit
CTGTAAAGATAAATGGGTCATCTAAGGAGTATGGAGCTGGGATTGACTCG96130.25611397857999413No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGGCTCG91840.24468436276694747No Hit
CTGTAAAGATAAATGGGTCATCTAATGAGTATGGATCTGGGATTGATCCG87890.2341605906313917No Hit
CTGTAAAGATAAATGGGTCATCTAAAGGGTATGGAGCTGGGATTGACTCG85350.22739340551131282No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGGGCTGGGATTGACTCG78630.20948967165031665No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATCGACTCG76340.20338854805780457No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGGTTGACTCG70560.18798920554045964No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCCGGGATTGACTCG65710.1750676119056633No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACCCG61250.16318507425387122No Hit
CTGTAAAGATAAATGGGCCATCTAAAGAGTATGGAGCTGGGATTGACTCG60290.16062739798801462No Hit
CTGTCAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG56600.15079632984112834No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGACTGACTCG54840.14610725668705793No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTACGGAGCTGGGATTGACTCG52430.13968642356131375No Hit
CTGTAAAGATAACTGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG51340.1367823953011224No Hit
CTGTAAAGATAAATGGGTCATCTACAGAGTATGGAGCTGGGATTGACTCG50620.13486413810172998No Hit
CCGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG50360.13417143411306048No Hit
CTGTAAAGATAAATGGGTCGTCTAAAGAGTATGGAGCTGGGATTGACTCG47030.12529949456587042No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTGTGGAGCTGGGATTGACTCG45890.12226225400016572No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTTG45030.11997100234533585No Hit
CTGTAAAGCTAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG41890.11160526955909657No Hit
CTGTAAAGATAAGTGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG41890.11160526955909657No Hit
CTGTAAAGATAAATGGGTCACCTAAAGAGTATGGAGCTGGGATTGACTCG41260.1099267945096282No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGCATGGAGCTGGGATTGACTCG39920.10635670472187002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)