FastQCFastQC Report
Tue 17 Oct 2023
000000000-GHTTR_l01.1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-GHTTR_l01.1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6191321
Sequences flagged as poor quality0
Sequence length301
%GC41

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT561577990.7040516878385No Hit
TCTTCTTCCTCTTCTCCCCTTCCCCCTTTCTTTCCTTCTCCTTTTCCTTT167400.2703784862713466No Hit
GCTGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT157030.2536292335674406No Hit
GATGAGTCAGCGTCGCACATGCAACATTTATTGCATGATACGTGGCATTT113120.18270737375755514No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)