FastQCFastQC Report
Sat 12 Aug 2023
000000000-GGC2R_l01.3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-GGC2R_l01.3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3901304
Sequences flagged as poor quality0
Sequence length8
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTACACT324842783.26515954665415Illumina Single End PCR Primer 1 (100% over 8bp)
TCTTTCCC61310015.715258282871572Illumina Single End PCR Primer 1 (100% over 8bp)
CTACACTT39930.10235039361198203No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)