FastQCFastQC Report
Sat 12 Aug 2023
000000000-GGC2R_l01.2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-GGC2R_l01.2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3901304
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTATAC284819673.00625636966511No Hit
GCGTATAA694821.780994252178246No Hit
GCGTATAT430571.1036566235289533No Hit
CGTATACA265220.6798239768036533No Hit
GCTTATAC196470.5036008473064391No Hit
GCGTATCC185740.4760972228772738No Hit
TCTTCTCC161610.4142461084806516No Hit
GCGATACA142890.36626215234701015No Hit
GCGTAACA132360.3392711770218368No Hit
GCGTCTAC119900.30733313784314165No Hit
TCTTCTAC110300.28272598085153067No Hit
GCGTATNC109920.28175194755394606No Hit
TCTTATAC107030.27434416800126316No Hit
GCGTATCT93940.24079128414499357No Hit
TCGTATAC93910.24071438677939477No Hit
GCTTCTAC76360.19572942790410588No Hit
GCGTATGC67570.17319849978366209No Hit
TCTTATCC65190.1670979754461585No Hit
GCTTATCC58800.15071883657361745No Hit
GCGTCTCC56260.14420819295292037No Hit
GCTTCTCC53510.13715926777303178No Hit
GCATATAC52030.13336566440349176No Hit
GCGTATCA40790.1045547847591472No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)