[2023-08-02 16:05:39,677] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-08-02 16:05:39,677] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-08-02 16:05:39,677] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-08-02 16:05:39,680] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-08-02 16:05:39,680] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-08-02 16:05:39,680] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/000000000-GG345/1 [2023-08-02 16:05:40,665] multiqc [WARNING] MultiQC Version v1.14 now available! [2023-08-02 16:05:40,665] multiqc [INFO ] This is MultiQC v1.9 [2023-08-02 16:05:40,665] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/000000000-GG345/1 [2023-08-02 16:05:40,665] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/000000000-GG345/1 [2023-08-02 16:05:40,665] multiqc [INFO ] Template : default [2023-08-02 16:05:40,665] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-08-02 16:05:40,665] multiqc [INFO ] Searching : /scratch/gencore/logs/html/000000000-GG345/1 [2023-08-02 16:05:40,666] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-08-02 16:05:40,666] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-35992824/tmprkss7wyx [2023-08-02 16:05:40,774] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col7_mod_third_fastqc.html [2023-08-02 16:05:40,777] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col7_mod_third_fastqc.html [2023-08-02 16:05:40,842] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col2_mod_third_fastqc.html [2023-08-02 16:05:40,846] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col2_mod_third_fastqc.html [2023-08-02 16:05:40,898] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col2_mod_third_fastqc.html [2023-08-02 16:05:40,900] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col2_mod_third_fastqc.html [2023-08-02 16:05:40,945] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col3_mod_third_fastqc.html [2023-08-02 16:05:40,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col3_mod_third_fastqc.html [2023-08-02 16:05:41,008] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 16:05:41,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 16:05:41,009] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 16:05:41,009] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 16:05:41,009] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 16:05:41,009] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 16:05:41,009] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 16:05:41,034] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 16:05:42,082] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_undetermined_fastqc.html [2023-08-02 16:05:42,084] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_undetermined_fastqc.html [2023-08-02 16:05:42,125] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col1_mod_third_fastqc.html [2023-08-02 16:05:42,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col1_mod_third_fastqc.html [2023-08-02 16:05:42,188] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col6_mod_third_fastqc.html [2023-08-02 16:05:42,190] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col6_mod_third_fastqc.html [2023-08-02 16:05:42,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col4_mod_third_fastqc.html [2023-08-02 16:05:42,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col4_mod_third_fastqc.html [2023-08-02 16:05:42,304] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col6_mod_third_fastqc.html [2023-08-02 16:05:42,306] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col6_mod_third_fastqc.html [2023-08-02 16:05:42,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col5_mod_third_fastqc.html [2023-08-02 16:05:42,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col5_mod_third_fastqc.html [2023-08-02 16:05:42,415] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col8_mod_third_fastqc.html [2023-08-02 16:05:42,417] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col8_mod_third_fastqc.html [2023-08-02 16:05:42,463] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col5_mod_third_fastqc.html [2023-08-02 16:05:42,465] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col5_mod_third_fastqc.html [2023-08-02 16:05:42,513] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col4_mod_third_fastqc.html [2023-08-02 16:05:42,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col4_mod_third_fastqc.html [2023-08-02 16:05:42,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col9_mod_third_fastqc.html [2023-08-02 16:05:42,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col9_mod_third_fastqc.html [2023-08-02 16:05:42,630] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col6_mod_third_fastqc.html [2023-08-02 16:05:42,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col6_mod_third_fastqc.html [2023-08-02 16:05:42,679] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col5_mod_third_fastqc.html [2023-08-02 16:05:42,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col5_mod_third_fastqc.html [2023-08-02 16:05:42,742] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col3_mod_third_fastqc.html [2023-08-02 16:05:42,744] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col3_mod_third_fastqc.html [2023-08-02 16:05:42,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col3_mod_third_fastqc.html [2023-08-02 16:05:42,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col3_mod_third_fastqc.html [2023-08-02 16:05:42,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_undetermined_fastqc.html [2023-08-02 16:05:42,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_undetermined_fastqc.html [2023-08-02 16:05:42,903] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col1_mod_third_fastqc.html [2023-08-02 16:05:42,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col1_mod_third_fastqc.html [2023-08-02 16:05:42,954] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col8_mod_third_fastqc.html [2023-08-02 16:05:42,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col8_mod_third_fastqc.html [2023-08-02 16:05:43,015] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col7_mod_third_fastqc.html [2023-08-02 16:05:43,017] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col7_mod_third_fastqc.html [2023-08-02 16:05:43,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col9_mod_third_fastqc.html [2023-08-02 16:05:43,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col9_mod_third_fastqc.html [2023-08-02 16:05:43,109] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col10_mod_third_fastqc.html [2023-08-02 16:05:43,111] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col10_mod_third_fastqc.html [2023-08-02 16:05:43,174] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col4_mod_third_fastqc.html [2023-08-02 16:05:43,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col4_mod_third_fastqc.html [2023-08-02 16:05:43,236] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col7_mod_third_fastqc.html [2023-08-02 16:05:43,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col7_mod_third_fastqc.html [2023-08-02 16:05:43,297] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col10_mod_third_fastqc.html [2023-08-02 16:05:43,299] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col10_mod_third_fastqc.html [2023-08-02 16:05:43,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col2_mod_third_fastqc.html [2023-08-02 16:05:43,361] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col2_mod_third_fastqc.html [2023-08-02 16:05:43,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col4_mod_third_fastqc.html [2023-08-02 16:05:43,423] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col4_mod_third_fastqc.html [2023-08-02 16:05:43,471] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col9_mod_third_fastqc.html [2023-08-02 16:05:43,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col9_mod_third_fastqc.html [2023-08-02 16:05:43,532] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col3_mod_third_fastqc.html [2023-08-02 16:05:43,534] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col3_mod_third_fastqc.html [2023-08-02 16:05:43,586] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col2_mod_third_fastqc.html [2023-08-02 16:05:43,588] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col2_mod_third_fastqc.html [2023-08-02 16:05:43,650] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col5_mod_third_fastqc.html [2023-08-02 16:05:43,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col5_mod_third_fastqc.html [2023-08-02 16:05:43,714] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col7_mod_third_fastqc.html [2023-08-02 16:05:43,715] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col7_mod_third_fastqc.html [2023-08-02 16:05:43,766] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col10_mod_third_fastqc.html [2023-08-02 16:05:43,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col10_mod_third_fastqc.html [2023-08-02 16:05:43,814] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col1_mod_third_fastqc.html [2023-08-02 16:05:43,816] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col1_mod_third_fastqc.html [2023-08-02 16:05:43,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col8_mod_third_fastqc.html [2023-08-02 16:05:43,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col8_mod_third_fastqc.html [2023-08-02 16:05:43,925] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col6_mod_third_fastqc.html [2023-08-02 16:05:43,927] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col6_mod_third_fastqc.html [2023-08-02 16:05:43,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col10_mod_third_fastqc.html [2023-08-02 16:05:43,990] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col10_mod_third_fastqc.html [2023-08-02 16:05:44,040] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col9_mod_third_fastqc.html [2023-08-02 16:05:44,042] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col9_mod_third_fastqc.html [2023-08-02 16:05:44,088] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col1_mod_third_fastqc.html [2023-08-02 16:05:44,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col1_mod_third_fastqc.html [2023-08-02 16:05:44,136] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col8_mod_third_fastqc.html [2023-08-02 16:05:44,138] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col8_mod_third_fastqc.html [2023-08-02 16:05:44,510] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-08-02 16:05:44,511] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-08-02 16:05:44,528] multiqc.modules.custom_content.custom_content [INFO ] demux_report-1: Found 21 samples (table) [2023-08-02 16:05:44,538] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-08-02 16:05:44,539] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-08-02 16:05:44,544] multiqc [DEBUG ] No samples found: conpair [2023-08-02 16:05:44,549] multiqc [DEBUG ] No samples found: peddy [2023-08-02 16:05:44,554] multiqc [DEBUG ] No samples found: somalier [2023-08-02 16:05:44,559] multiqc [DEBUG ] No samples found: methylQA [2023-08-02 16:05:44,568] multiqc [DEBUG ] No samples found: mosdepth [2023-08-02 16:05:44,572] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-08-02 16:05:44,576] multiqc [DEBUG ] No samples found: qualimap [2023-08-02 16:05:44,580] multiqc [DEBUG ] No samples found: preseq [2023-08-02 16:05:44,585] multiqc [DEBUG ] No samples found: quast [2023-08-02 16:05:44,590] multiqc [DEBUG ] No samples found: qorts [2023-08-02 16:05:44,595] multiqc [DEBUG ] No samples found: rna_seqc [2023-08-02 16:05:44,600] multiqc [DEBUG ] No samples found: rockhopper [2023-08-02 16:05:44,605] multiqc [DEBUG ] No samples found: rsem [2023-08-02 16:05:44,617] multiqc [DEBUG ] No samples found: rseqc [2023-08-02 16:05:44,621] multiqc [DEBUG ] No samples found: busco [2023-08-02 16:05:44,626] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-08-02 16:05:44,631] multiqc [DEBUG ] No samples found: disambiguate [2023-08-02 16:05:44,636] multiqc [DEBUG ] No samples found: supernova [2023-08-02 16:05:44,649] multiqc [DEBUG ] No samples found: deeptools [2023-08-02 16:05:44,654] multiqc [DEBUG ] No samples found: sargasso [2023-08-02 16:05:44,659] multiqc [DEBUG ] No samples found: verifybamid [2023-08-02 16:05:44,664] multiqc [DEBUG ] No samples found: mirtrace [2023-08-02 16:05:44,669] multiqc [DEBUG ] No samples found: happy [2023-08-02 16:05:44,674] multiqc [DEBUG ] No samples found: mirtop [2023-08-02 16:05:44,681] multiqc [DEBUG ] No samples found: homer [2023-08-02 16:05:44,686] multiqc [DEBUG ] No samples found: macs2 [2023-08-02 16:05:44,690] multiqc [DEBUG ] No samples found: theta2 [2023-08-02 16:05:44,696] multiqc [DEBUG ] No samples found: snpeff [2023-08-02 16:05:44,703] multiqc [DEBUG ] No samples found: gatk [2023-08-02 16:05:44,708] multiqc [DEBUG ] No samples found: htseq [2023-08-02 16:05:44,713] multiqc [DEBUG ] No samples found: bcftools [2023-08-02 16:05:44,718] multiqc [DEBUG ] No samples found: featureCounts [2023-08-02 16:05:44,725] multiqc [DEBUG ] No samples found: fgbio [2023-08-02 16:05:44,738] multiqc [DEBUG ] No samples found: dragen [2023-08-02 16:05:44,743] multiqc [DEBUG ] No samples found: dedup [2023-08-02 16:05:44,748] multiqc [DEBUG ] No samples found: damageprofiler [2023-08-02 16:05:44,773] multiqc [DEBUG ] No samples found: biobambam2 [2023-08-02 16:05:44,778] multiqc [DEBUG ] No samples found: mtnucratio [2023-08-02 16:05:44,780] multiqc [DEBUG ] No samples found: picard [2023-08-02 16:05:44,785] multiqc [DEBUG ] No samples found: prokka [2023-08-02 16:05:44,790] multiqc [DEBUG ] No samples found: samblaster [2023-08-02 16:05:44,800] multiqc [DEBUG ] No samples found: samtools [2023-08-02 16:05:44,804] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-08-02 16:05:44,810] multiqc [DEBUG ] No samples found: bamtools [2023-08-02 16:05:44,814] multiqc [DEBUG ] No samples found: jellyfish [2023-08-02 16:05:44,822] multiqc [DEBUG ] No samples found: vcftools [2023-08-02 16:05:44,827] multiqc [DEBUG ] No samples found: longranger [2023-08-02 16:05:44,832] multiqc [DEBUG ] No samples found: stacks [2023-08-02 16:05:44,837] multiqc [DEBUG ] No samples found: varscan2 [2023-08-02 16:05:44,852] multiqc [DEBUG ] No samples found: bbmap [2023-08-02 16:05:44,856] multiqc [DEBUG ] No samples found: bismark [2023-08-02 16:05:44,862] multiqc [DEBUG ] No samples found: biscuit [2023-08-02 16:05:44,867] multiqc [DEBUG ] No samples found: hicexplorer [2023-08-02 16:05:44,872] multiqc [DEBUG ] No samples found: hicup [2023-08-02 16:05:44,877] multiqc [DEBUG ] No samples found: hicpro [2023-08-02 16:05:44,882] multiqc [DEBUG ] No samples found: salmon [2023-08-02 16:05:44,887] multiqc [DEBUG ] No samples found: kallisto [2023-08-02 16:05:44,892] multiqc [DEBUG ] No samples found: slamdunk [2023-08-02 16:05:44,897] multiqc [DEBUG ] No samples found: star [2023-08-02 16:05:44,901] multiqc [DEBUG ] No samples found: hisat2 [2023-08-02 16:05:44,906] multiqc [DEBUG ] No samples found: tophat [2023-08-02 16:05:44,911] multiqc [DEBUG ] No samples found: bowtie2 [2023-08-02 16:05:44,916] multiqc [DEBUG ] No samples found: bowtie1 [2023-08-02 16:05:44,921] multiqc [DEBUG ] No samples found: snpsplit [2023-08-02 16:05:44,925] multiqc [DEBUG ] No samples found: kat [2023-08-02 16:05:44,929] multiqc [DEBUG ] No samples found: leehom [2023-08-02 16:05:44,934] multiqc [DEBUG ] No samples found: adapterRemoval [2023-08-02 16:05:44,939] multiqc [DEBUG ] No samples found: clipandmerge [2023-08-02 16:05:44,943] multiqc [DEBUG ] No samples found: cutadapt [2023-08-02 16:05:44,948] multiqc [DEBUG ] No samples found: flexbar [2023-08-02 16:05:44,953] multiqc [DEBUG ] No samples found: kaiju [2023-08-02 16:05:44,957] multiqc [DEBUG ] No samples found: kraken [2023-08-02 16:05:44,962] multiqc [DEBUG ] No samples found: malt [2023-08-02 16:05:44,966] multiqc [DEBUG ] No samples found: trimmomatic [2023-08-02 16:05:44,971] multiqc [DEBUG ] No samples found: sickle [2023-08-02 16:05:44,976] multiqc [DEBUG ] No samples found: skewer [2023-08-02 16:05:44,980] multiqc [DEBUG ] No samples found: sortmerna [2023-08-02 16:05:44,984] multiqc [DEBUG ] No samples found: biobloomtools [2023-08-02 16:05:44,989] multiqc [DEBUG ] No samples found: fastq_screen [2023-08-02 16:05:44,994] multiqc [DEBUG ] No samples found: afterqc [2023-08-02 16:05:44,999] multiqc [DEBUG ] No samples found: fastp [2023-08-02 16:05:45,119] multiqc.modules.fastqc.fastqc [INFO ] Found 42 reports [2023-08-02 16:05:45,424] multiqc [DEBUG ] No samples found: pycoqc [2023-08-02 16:05:45,429] multiqc [DEBUG ] No samples found: minionqc [2023-08-02 16:05:45,434] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-08-02 16:05:45,440] multiqc [DEBUG ] No samples found: clusterflow [2023-08-02 16:05:45,447] multiqc [DEBUG ] No samples found: bcl2fastq [2023-08-02 16:05:45,452] multiqc [DEBUG ] No samples found: interop [2023-08-02 16:05:45,457] multiqc [DEBUG ] No samples found: ivar [2023-08-02 16:05:45,463] multiqc [DEBUG ] No samples found: flash [2023-08-02 16:05:45,468] multiqc [DEBUG ] No samples found: seqyclean [2023-08-02 16:05:45,468] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-08-02 16:05:45,468] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2023-08-02 16:05:45,468] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-08-02 16:05:45,468] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Lane 1 Demultiplexing Report'. [2023-08-02 16:05:45,468] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane 1 Demultiplexing Report'. [2023-08-02 16:05:45,468] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Lane 1 Demultiplexing Report'. [2023-08-02 16:05:45,468] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Lane 1 Demultiplexing Report'. [2023-08-02 16:05:45,468] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Lane 1 Demultiplexing Report'. [2023-08-02 16:05:45,468] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Lane 1 Demultiplexing Report'. [2023-08-02 16:05:45,468] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Lane 1 Demultiplexing Report'. [2023-08-02 16:05:45,468] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Lane Statistics'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane Statistics'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Lane Statistics'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Lane Statistics'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Lane Statistics'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Lane Statistics'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Lane Statistics'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-08-02 16:05:45,469] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-08-02 16:05:45,518] multiqc [INFO ] Compressing plot data [2023-08-02 16:05:45,959] multiqc [INFO ] Report : multiqc_report.html [2023-08-02 16:05:45,959] multiqc [INFO ] Data : multiqc_data [2023-08-02 16:05:45,959] multiqc [DEBUG ] Moving data file from '/state/partition1/job-35992824/tmprkss7wyx/multiqc_data' to '/scratch/gencore/logs/html/000000000-GG345/1/multiqc_data' [2023-08-02 16:05:46,084] multiqc [INFO ] MultiQC complete