FastQCFastQC Report
Sat 18 Dec 2021
000000000-G992J_l01_n02_WGS21-1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G992J_l01_n02_WGS21-1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences348450
Sequences flagged as poor quality0
Sequence length287
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACAGTCGACT19577256.18367054096714No Hit
GGCGATACGACAGCAGTATCTGCTGTCATGGGACTGCACGACAGTCGACT122383.5121251255560337No Hit
CCGCTATCGACAGCAGTATCTGCTGCTATGGGCGAGCGCTATGAGCGACT18940.5435500071746305No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACAGCTATGG17870.5128425886066867No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACAGTCTATG17390.4990672980341513No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCTATGGGCGAGCGC17270.4956234753910173No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACAGTCGAAC16770.48127421437795953No Hit
CCGCTATCGACAGCAGTATCTGCCTATGGGAGAGCGCGCTCGTCGACTAT16420.47122973166881904No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACAGAGAGCGCGC12710.36475821495192995No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA12190.34983498349834985No Hit
CCGCTATCTATGGGCGAGCGCTATGAGCGACTATGGGACAGCAGTACTAC10290.2953077916487301No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACAGTCGAAG9900.284115368058545No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATCTATGGGCGAGCGCTATGAGC9500.27263595924809875No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACAGTCGACC9120.2617305208781748No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGCTATGGGCGAGCGCTATGA8810.2528339790500789No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACACTATGGG8700.2496771416272062No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACTATGGGCG7880.22614435356579135No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACTATGGGAG7700.22097861960109055No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACATGGATCGACA6960.19974171330176493No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGCTATGGGCGA6480.18596642272922945No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACAGTCGATC6310.18108767398478978No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACAGTCGATA6300.18080068876452862No Hit
CCGCTATCTATGGGCGAGCGCTATGAGCGTTGAGTCGCCTCCTTTTAAAT6250.17936576266322285No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACAGTCCTAT5990.17190414693643277No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG5900.16932127995408236Illumina Single End PCR Primer 1 (100% over 50bp)
CCGCTATCGACAGCAGTATCTGCTGTCATTGGACTGCACGACAGTCGACT5840.16759936863251543No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGCTATGGGCGAGCGCTATG5740.16472951642990386No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGTGACTGCACGACAGTCGACT5530.15870282680441958No Hit
CCGCTATCGACAGCAGTATCTGCTGCTATGGGTCAGCAGTACTACTGACT5510.15812885636389726No Hit
CCGCTATCGACAGCAGTATCTGCTGTCACTATGGGCGAGCGCTATGAGCG5200.1492323145358014No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACAACTATGG4590.13172621609987084No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGCTATGGGCGAGCGCTATGAG4400.12627349691490888No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACAAGTATGG3970.11393313244367916No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTATGGGCGAGCGCTAT3920.11249820634237338No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCGACTATGGGACAG3910.11221122112211222No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTATGGGAGAGCGCGCT3830.10991533936002296No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACAGTGCATG3800.10905438369923949No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGTACTGCACGACAGTCGACT3720.10675850193715025No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTACTATGGGCGAGCGC3600.10331467929401636No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTCTATGGGCGAGCTAT3520.10101879753192712No Hit
CCGCTATCGACAGCAGTATCTGCTGTCATGGGACTGCACGACAGTCGCTA3500.10044482709140479No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)