[2021-05-06 05:58:36,878] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml
[2021-05-06 05:58:36,878] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml
[2021-05-06 05:58:36,878] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2021-05-06 05:58:36,879] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml
[2021-05-06 05:58:36,879] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2021-05-06 05:58:36,880] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/000000000-G6GVD/1
[2021-05-06 05:58:38,284] multiqc [WARNING] MultiQC Version v1.10.1 now available!
[2021-05-06 05:58:38,284] multiqc [INFO ] This is MultiQC v1.9
[2021-05-06 05:58:38,284] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/000000000-G6GVD/1
[2021-05-06 05:58:38,284] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/000000000-G6GVD/1
[2021-05-06 05:58:38,284] multiqc [INFO ] Template : default
[2021-05-06 05:58:38,284] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode]
[2021-05-06 05:58:38,284] multiqc [INFO ] Searching : /scratch/gencore/logs/html/000000000-G6GVD/1
[2021-05-06 05:58:38,285] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean
[2021-05-06 05:58:38,285] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-6471300/tmp_45ggclx
[2021-05-06 05:58:38,424] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-8_fastqc.html
[2021-05-06 05:58:38,427] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-8_fastqc.html
[2021-05-06 05:58:38,492] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2021-05-06 05:58:38,493] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2021-05-06 05:58:38,493] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2021-05-06 05:58:38,493] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2021-05-06 05:58:38,493] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2021-05-06 05:58:38,493] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2021-05-06 05:58:38,493] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2021-05-06 05:58:39,272] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-1_fastqc.html
[2021-05-06 05:58:39,274] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-1_fastqc.html
[2021-05-06 05:58:39,332] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-1_fastqc.html
[2021-05-06 05:58:39,334] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-1_fastqc.html
[2021-05-06 05:58:39,398] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-7_fastqc.html
[2021-05-06 05:58:39,400] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-7_fastqc.html
[2021-05-06 05:58:39,470] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_undetermined_fastqc.html
[2021-05-06 05:58:39,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_undetermined_fastqc.html
[2021-05-06 05:58:39,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-6_fastqc.html
[2021-05-06 05:58:39,524] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-6_fastqc.html
[2021-05-06 05:58:39,582] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-4_fastqc.html
[2021-05-06 05:58:39,584] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-4_fastqc.html
[2021-05-06 05:58:39,640] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-6_fastqc.html
[2021-05-06 05:58:39,642] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-6_fastqc.html
[2021-05-06 05:58:39,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-3_fastqc.html
[2021-05-06 05:58:39,714] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-3_fastqc.html
[2021-05-06 05:58:39,772] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-7_fastqc.html
[2021-05-06 05:58:39,773] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-7_fastqc.html
[2021-05-06 05:58:39,831] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-3_fastqc.html
[2021-05-06 05:58:39,833] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-3_fastqc.html
[2021-05-06 05:58:39,898] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-5_fastqc.html
[2021-05-06 05:58:39,900] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-5_fastqc.html
[2021-05-06 05:58:39,957] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-8_fastqc.html
[2021-05-06 05:58:39,959] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-8_fastqc.html
[2021-05-06 05:58:40,017] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-2_fastqc.html
[2021-05-06 05:58:40,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_WGS18-2_fastqc.html
[2021-05-06 05:58:40,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-5_fastqc.html
[2021-05-06 05:58:40,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-5_fastqc.html
[2021-05-06 05:58:40,147] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_undetermined_fastqc.html
[2021-05-06 05:58:40,148] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n01_undetermined_fastqc.html
[2021-05-06 05:58:40,192] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-2_fastqc.html
[2021-05-06 05:58:40,194] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-2_fastqc.html
[2021-05-06 05:58:40,256] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-4_fastqc.html
[2021-05-06 05:58:40,258] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-G6GVD_l01_n02_WGS18-4_fastqc.html
[2021-05-06 05:58:40,787] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2
[2021-05-06 05:58:40,794] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2
[2021-05-06 05:58:40,803] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2021-05-06 05:58:40,808] multiqc.modules.custom_content.custom_content [INFO ] demux_report-1: Found 9 samples (table)
[2021-05-06 05:58:40,818] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table)
[2021-05-06 05:58:40,824] multiqc [DEBUG ] No samples found: conpair
[2021-05-06 05:58:40,830] multiqc [DEBUG ] No samples found: peddy
[2021-05-06 05:58:40,836] multiqc [DEBUG ] No samples found: somalier
[2021-05-06 05:58:40,842] multiqc [DEBUG ] No samples found: methylQA
[2021-05-06 05:58:40,852] multiqc [DEBUG ] No samples found: mosdepth
[2021-05-06 05:58:40,857] multiqc [DEBUG ] No samples found: phantompeakqualtools
[2021-05-06 05:58:40,861] multiqc [DEBUG ] No samples found: qualimap
[2021-05-06 05:58:40,867] multiqc [DEBUG ] No samples found: preseq
[2021-05-06 05:58:40,873] multiqc [DEBUG ] No samples found: quast
[2021-05-06 05:58:40,879] multiqc [DEBUG ] No samples found: qorts
[2021-05-06 05:58:40,885] multiqc [DEBUG ] No samples found: rna_seqc
[2021-05-06 05:58:40,890] multiqc [DEBUG ] No samples found: rockhopper
[2021-05-06 05:58:40,896] multiqc [DEBUG ] No samples found: rsem
[2021-05-06 05:58:40,910] multiqc [DEBUG ] No samples found: rseqc
[2021-05-06 05:58:40,915] multiqc [DEBUG ] No samples found: busco
[2021-05-06 05:58:40,921] multiqc [DEBUG ] No samples found: goleft_indexcov
[2021-05-06 05:58:40,926] multiqc [DEBUG ] No samples found: disambiguate
[2021-05-06 05:58:40,932] multiqc [DEBUG ] No samples found: supernova
[2021-05-06 05:58:40,949] multiqc [DEBUG ] No samples found: deeptools
[2021-05-06 05:58:40,955] multiqc [DEBUG ] No samples found: sargasso
[2021-05-06 05:58:40,960] multiqc [DEBUG ] No samples found: verifybamid
[2021-05-06 05:58:40,966] multiqc [DEBUG ] No samples found: mirtrace
[2021-05-06 05:58:40,971] multiqc [DEBUG ] No samples found: happy
[2021-05-06 05:58:40,976] multiqc [DEBUG ] No samples found: mirtop
[2021-05-06 05:58:40,984] multiqc [DEBUG ] No samples found: homer
[2021-05-06 05:58:40,989] multiqc [DEBUG ] No samples found: macs2
[2021-05-06 05:58:40,994] multiqc [DEBUG ] No samples found: theta2
[2021-05-06 05:58:41,000] multiqc [DEBUG ] No samples found: snpeff
[2021-05-06 05:58:41,008] multiqc [DEBUG ] No samples found: gatk
[2021-05-06 05:58:41,012] multiqc [DEBUG ] No samples found: htseq
[2021-05-06 05:58:41,018] multiqc [DEBUG ] No samples found: bcftools
[2021-05-06 05:58:41,029] multiqc [DEBUG ] No samples found: featureCounts
[2021-05-06 05:58:41,036] multiqc [DEBUG ] No samples found: fgbio
[2021-05-06 05:58:41,052] multiqc [DEBUG ] No samples found: dragen
[2021-05-06 05:58:41,057] multiqc [DEBUG ] No samples found: dedup
[2021-05-06 05:58:41,063] multiqc [DEBUG ] No samples found: damageprofiler
[2021-05-06 05:58:41,139] multiqc [DEBUG ] No samples found: biobambam2
[2021-05-06 05:58:41,143] multiqc [DEBUG ] No samples found: mtnucratio
[2021-05-06 05:58:41,146] multiqc [DEBUG ] No samples found: picard
[2021-05-06 05:58:41,151] multiqc [DEBUG ] No samples found: prokka
[2021-05-06 05:58:41,156] multiqc [DEBUG ] No samples found: samblaster
[2021-05-06 05:58:41,181] multiqc [DEBUG ] No samples found: samtools
[2021-05-06 05:58:41,186] multiqc [DEBUG ] No samples found: sexdeterrmine
[2021-05-06 05:58:41,192] multiqc [DEBUG ] No samples found: bamtools
[2021-05-06 05:58:41,197] multiqc [DEBUG ] No samples found: jellyfish
[2021-05-06 05:58:41,208] multiqc [DEBUG ] No samples found: vcftools
[2021-05-06 05:58:41,213] multiqc [DEBUG ] No samples found: longranger
[2021-05-06 05:58:41,219] multiqc [DEBUG ] No samples found: stacks
[2021-05-06 05:58:41,224] multiqc [DEBUG ] No samples found: varscan2
[2021-05-06 05:58:41,240] multiqc [DEBUG ] No samples found: bbmap
[2021-05-06 05:58:41,246] multiqc [DEBUG ] No samples found: bismark
[2021-05-06 05:58:41,252] multiqc [DEBUG ] No samples found: biscuit
[2021-05-06 05:58:41,257] multiqc [DEBUG ] No samples found: hicexplorer
[2021-05-06 05:58:41,263] multiqc [DEBUG ] No samples found: hicup
[2021-05-06 05:58:41,268] multiqc [DEBUG ] No samples found: hicpro
[2021-05-06 05:58:41,273] multiqc [DEBUG ] No samples found: salmon
[2021-05-06 05:58:41,279] multiqc [DEBUG ] No samples found: kallisto
[2021-05-06 05:58:41,284] multiqc [DEBUG ] No samples found: slamdunk
[2021-05-06 05:58:41,293] multiqc [DEBUG ] No samples found: star
[2021-05-06 05:58:41,298] multiqc [DEBUG ] No samples found: hisat2
[2021-05-06 05:58:41,303] multiqc [DEBUG ] No samples found: tophat
[2021-05-06 05:58:41,308] multiqc [DEBUG ] No samples found: bowtie2
[2021-05-06 05:58:41,313] multiqc [DEBUG ] No samples found: bowtie1
[2021-05-06 05:58:41,318] multiqc [DEBUG ] No samples found: snpsplit
[2021-05-06 05:58:41,324] multiqc [DEBUG ] No samples found: kat
[2021-05-06 05:58:41,328] multiqc [DEBUG ] No samples found: leehom
[2021-05-06 05:58:41,334] multiqc [DEBUG ] No samples found: adapterRemoval
[2021-05-06 05:58:41,339] multiqc [DEBUG ] No samples found: clipandmerge
[2021-05-06 05:58:41,344] multiqc [DEBUG ] No samples found: cutadapt
[2021-05-06 05:58:41,349] multiqc [DEBUG ] No samples found: flexbar
[2021-05-06 05:58:41,354] multiqc [DEBUG ] No samples found: kaiju
[2021-05-06 05:58:41,359] multiqc [DEBUG ] No samples found: kraken
[2021-05-06 05:58:41,365] multiqc [DEBUG ] No samples found: malt
[2021-05-06 05:58:41,370] multiqc [DEBUG ] No samples found: trimmomatic
[2021-05-06 05:58:41,375] multiqc [DEBUG ] No samples found: sickle
[2021-05-06 05:58:41,380] multiqc [DEBUG ] No samples found: skewer
[2021-05-06 05:58:41,385] multiqc [DEBUG ] No samples found: sortmerna
[2021-05-06 05:58:41,390] multiqc [DEBUG ] No samples found: biobloomtools
[2021-05-06 05:58:41,396] multiqc [DEBUG ] No samples found: fastq_screen
[2021-05-06 05:58:41,401] multiqc [DEBUG ] No samples found: afterqc
[2021-05-06 05:58:41,414] multiqc [DEBUG ] No samples found: fastp
[2021-05-06 05:58:41,477] multiqc.modules.fastqc.fastqc [INFO ] Found 18 reports
[2021-05-06 05:58:41,693] multiqc [DEBUG ] No samples found: pycoqc
[2021-05-06 05:58:41,697] multiqc [DEBUG ] No samples found: minionqc
[2021-05-06 05:58:41,703] multiqc [DEBUG ] No samples found: multivcfanalyzer
[2021-05-06 05:58:41,708] multiqc [DEBUG ] No samples found: clusterflow
[2021-05-06 05:58:41,713] multiqc [DEBUG ] No samples found: bcl2fastq
[2021-05-06 05:58:41,719] multiqc [DEBUG ] No samples found: interop
[2021-05-06 05:58:41,724] multiqc [DEBUG ] No samples found: ivar
[2021-05-06 05:58:41,729] multiqc [DEBUG ] No samples found: flash
[2021-05-06 05:58:41,734] multiqc [DEBUG ] No samples found: seqyclean
[2021-05-06 05:58:41,734] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found.
[2021-05-06 05:58:41,734] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane Statistics'.
[2021-05-06 05:58:41,734] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane 1 Demultiplexing Report'.
[2021-05-06 05:58:41,734] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'.
[2021-05-06 05:58:41,734] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'.
[2021-05-06 05:58:41,756] multiqc [INFO ] Compressing plot data
[2021-05-06 05:58:42,022] multiqc [INFO ] Report : multiqc_report.html
[2021-05-06 05:58:42,022] multiqc [INFO ] Data : multiqc_data
[2021-05-06 05:58:42,022] multiqc [DEBUG ] Moving data file from '/state/partition1/job-6471300/tmp_45ggclx/multiqc_data' to '/scratch/gencore/logs/html/000000000-G6GVD/1/multiqc_data'
[2021-05-06 05:58:42,226] multiqc [INFO ] MultiQC complete