FastQCFastQC Report
Thu 8 Oct 2020
000000000-G6GV3_l01_n01_JRS_021_C9T.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G6GV3_l01_n01_JRS_021_C9T.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1361996
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGGCC302.8730358E-422.0000022
AGCGACC454.0825944E-722.012
CCGTTGC900.022.010
GCGAGGT9350.021.0588233
GGGCTAC7350.020.653061
CCGCTGC801.8189894E-1220.6250029
ACGCCAC5100.020.274519
ATATAGC4450.020.2696639
GCAGTAC3750.020.247
TGCGAGG9150.020.196722
GAGCCCG1200.020.1666682
ATGACGG551.2659257E-720.09
GTGCCGG1100.020.08
CTGCGAG9800.019.9795911
GCTGTAC1550.019.8709689
CGATCCG2000.019.85
CCATGGC4750.019.684212
GCAAACA3300.019.6666667
GACTTCC6050.019.6363641
CGGGACC1850.019.6216222
Produced by FastQC (version 0.11.5)