FastQCFastQC Report
Thu 8 Oct 2020
000000000-G6GV3_l01_n01_JRS_021_C9A.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G6GV3_l01_n01_JRS_021_C9A.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences972234
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGAAGAT302.8722177E-422.012
GGCCGAG302.8722177E-422.09
GCCGCAC250.002580077622.016
ACGGCCG250.002580077622.017
GGGGTGG250.002580077622.015
GGGCGCG302.8722177E-422.012
TGGGCGG302.8722177E-422.02
GGCGCGG353.2145188E-522.013
TCCCCCG250.002580077622.015
CCGCCGG250.002580077622.015
AAAATCA250.002580077622.016
GCATGCT454.0801024E-721.9999987
ACGCAGG1900.020.8421064
TGGAACT2150.020.4651171
TCAGAGG2650.020.3396228
TCCGGGA2550.020.274511
CCGGACA1900.020.2631571
GTGGCCC1250.020.248
GGCCCTA1250.020.2410
CCGGGAT601.4306352E-820.1666662
Produced by FastQC (version 0.11.5)