FastQCFastQC Report
Fri 28 Aug 2020
000000000-G69NY_l01_n01_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G69NY_l01_n01_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1796480
Sequences flagged as poor quality0
Sequence length28
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCTG403.617164E-622.0000026
TGGATCT403.617164E-622.0000025
ACCAATT403.617164E-622.0000025
CCGCCTG403.617164E-622.0000026
TAAGATG800.022.0000026
GTGTTAC250.002580921222.01
GAGGATC302.873531E-422.01
GTGCAGT250.002580921222.05
GAGTGTA250.002580921222.01
GTTCTAA250.002580921222.03
GTATTCC250.002580921222.04
CCGATGT900.022.07
CCGGCTG302.873531E-422.06
ACCGATG250.002580921222.06
CGCGCGT250.002580921222.05
ATTAAGA250.002580921222.02
GCCATTG250.002580921222.06
TGTGCAG250.002580921222.01
ACCTCTG555.2586984E-922.06
ATACTAC250.002580921222.020
Produced by FastQC (version 0.11.5)