FastQCFastQC Report
Fri 28 Aug 2020
000000000-G69NY_l01_n01_WGS17-6.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G69NY_l01_n01_WGS17-6.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences605867
Sequences flagged as poor quality0
Sequence length28
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACAACTG403.6106176E-622.06
TTGATCA250.002578966622.01
CTAGATG302.8704884E-422.06
AACAATG403.6106176E-622.06
GGGGATG605.966285E-1022.06
CGGAATG403.6106176E-622.06
GACAGTG353.2119417E-522.06
CTATGAC250.002578966622.03
TCGTTTA250.002578966622.03
TAATACA454.0748637E-722.02
ACAGTTG900.022.06
GTACCTG250.002578966622.06
TCGCATG454.0748637E-722.06
GCCTTGT1350.022.07
TACCCTG555.2405085E-922.06
TTGGCCA250.002578966622.02
CCGGGTG302.8704884E-422.06
ACAAATG454.0748637E-722.06
AGATCTG454.0748637E-722.06
TCCGCTG555.2405085E-922.06
Produced by FastQC (version 0.11.5)