FastQCFastQC Report
Fri 28 Aug 2020
000000000-G69NY_l01_n01_WGS17-4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G69NY_l01_n01_WGS17-4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences646042
Sequences flagged as poor quality0
Sequence length28
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGATG454.0757186E-722.0000026
ACTATTG454.0757186E-722.0000026
TACCCTG403.6112287E-622.0000026
CCTAGTG454.0757186E-722.0000026
ACGTTAT454.0757186E-722.0000025
AACCCGG403.6112287E-622.0000023
ACCGCTG403.6112287E-622.0000026
TGGAACT403.6112287E-622.0000025
CCAATTG403.6112287E-622.0000026
GCGCCTG403.6112287E-622.0000026
TATATAG403.6112287E-622.0000022
GTAGGTG800.022.0000026
GGTCACT403.6112287E-622.0000021
TATGCTG800.022.0000026
TAGCATG900.022.0000026
TACGCTG800.022.0000026
CTCGGTG403.6112287E-622.0000026
GGGAATG454.0757186E-722.0000026
AATCTTG656.730261E-1122.0000026
AACGATG454.0757186E-722.0000026
Produced by FastQC (version 0.11.5)