FastQCFastQC Report
Fri 28 Aug 2020
000000000-G69NY_l01_n01_WGS17-1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G69NY_l01_n01_WGS17-1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences687632
Sequences flagged as poor quality0
Sequence length28
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCAT403.6117908E-622.0000025
GTACATG800.022.0000026
TTAATAG403.6117908E-622.0000023
GCTATAG403.6117908E-622.0000022
TAACGTG800.022.0000026
CGGGGTG403.6117908E-622.0000026
CGAGCTG403.6117908E-622.0000026
CAGTCTG403.6117908E-622.0000026
CACACTG403.6117908E-622.0000026
GTCCATG403.6117908E-622.0000026
CCTGCTG403.6117908E-622.0000026
TCGACTG403.6117908E-622.0000026
TCGCCTG353.212754E-522.06
TTCTAGA250.002579316322.04
ATGGGAC250.002579316322.02
TTAGGAG250.002579316322.01
TCGTTCC250.002579316322.03
ACCGGTG353.212754E-522.06
GGAGCTG605.966285E-1022.06
AAATCCT250.002579316322.05
Produced by FastQC (version 0.11.5)