FastQCFastQC Report
Fri 11 Sep 2020
000000000-G69NV_l01_n01_JRS_018_C9A.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G69NV_l01_n01_JRS_018_C9A.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences156561
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTGTGA250.002570510622.010
ATGGGTC250.002570510622.04
CTTCGGA250.002570510622.06
AGCGTGC250.002570510622.02
AGCCGTC353.1923628E-522.03
ACTATCT302.8573402E-422.01
TCTTGTG250.002570510622.09
AGCCGAG302.8573402E-422.03
GTTCTTA250.002570510622.06
CACGGGC353.1923628E-522.02
GGGTCGT302.8573402E-422.06
GGCACAT250.002570510622.06
ACATTGA250.002570510622.07
CCGTGAA250.002570510622.09
CTAAGTG250.002570510622.01
GTGGCGT302.8573402E-422.01
GTGGCAC250.002570510622.08
GTAATTA250.002570510622.08
CTGAAAG250.002570510622.03
GCCGATT302.8573402E-422.013
Produced by FastQC (version 0.11.5)