FastQCFastQC Report
Fri 11 Sep 2020
000000000-G69NV_l01_n01_JRS_018_C8C.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G69NV_l01_n01_JRS_018_C8C.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences914196
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAGCC403.6139481E-622.05
CGAGGGA6900.021.0434786
TGAGCGA6850.021.0364952
CTGAGCG7200.020.9305551
GAGCGAG6900.020.8840583
GCGAGGG7000.020.7428575
GGGAGTG6900.020.7246369
GAGGGAG7550.020.397357
CGGAGGA601.4302714E-820.1666665
AGACGTT4150.020.1445774
GGTGACG1150.020.0869587
GAGCGCG551.2647979E-720.02
GGAGTGG7150.019.99999810
AAGACGT4300.019.4418623
CGGGCTC855.456968E-1219.4117643
GTCGAAC408.9855166E-519.257
AGGGGTC805.2750693E-1119.254
GTGTAGG1150.019.1304366
CTGGACG1150.019.1304361
CTGGGCG2600.019.0384629
Produced by FastQC (version 0.11.5)