FastQCFastQC Report
Fri 11 Sep 2020
000000000-G69NV_l01_n01_JRS_018_C8A.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G69NV_l01_n01_JRS_018_C8A.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences881777
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGCGA1550.020.5806476
GCCTAGC601.4300895E-820.1666664
AGGGAAG2700.019.5555573
TACCGGG2700.019.5555571
GCTGCGA1550.019.16129110
CGCCACA1150.019.13043610
AGGGCCT2900.018.9655191
GGGCTCG704.0763553E-918.8571432
AGGGTCC2750.018.81
ATGAGCG653.5839548E-818.61538310
CGAGCGA653.5839548E-818.6153836
TCTGAGA2200.018.08
GATGATC1350.017.9259281
GGACGAA1600.017.8752
CCTCGTG1850.017.837846
TACGGAG1050.017.80952510
TGACTGA1050.017.8095259
CCGGGAG1300.017.769233
ATTCCCG1300.017.769231
ATGCGAT1800.017.7222231
Produced by FastQC (version 0.11.5)