FastQCFastQC Report
Fri 5 Apr 2019
000000000-G3JC4_l01_n01_cDNA2_D.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G3JC4_l01_n01_cDNA2_D.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences347131
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACTAT356.6833905E-520.010
ATCTATC305.4560095E-420.07
GTATTAG356.6833905E-520.08
GAGCTAC356.6833905E-520.07
GGCACCA250.00447728620.06
TTATGTG601.9499566E-920.09
CCAATGA250.00447728620.07
CACGCGT408.2240385E-620.03
TACGGCT250.00447728620.011
TGACGGC850.020.01
CGGGGTC250.00447728620.04
ATTCCAA250.00447728620.06
GAGGTTC250.00447728620.05
ATTCACC305.4560095E-420.06
AAACCTC305.4560095E-420.010
TAGGGAA408.2240385E-620.07
GGACGCT551.5650585E-820.02
CCGACGT305.4560095E-420.010
TTGCCAC250.00447728620.04
GATCTAA305.4560095E-420.06
Produced by FastQC (version 0.11.5)