FastQCFastQC Report
Fri 5 Apr 2019
000000000-G3JC4_l01_n01_cDNA2_B.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G3JC4_l01_n01_cDNA2_B.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences297801
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGACC305.4535083E-420.0000028
GGTCGAG305.4535083E-420.0000027
GAATGGA305.4535083E-420.00000210
CGTGCAC305.4535083E-420.0000027
GTGATGT305.4535083E-420.0000028
CTGACCT305.4535083E-420.0000029
TACGCCG305.4535083E-420.00000210
GTGCTCA305.4535083E-420.0000024
GAGCGAC305.4535083E-420.0000022
CCGAGTG305.4535083E-420.0000024
GCTGTGT305.4535083E-420.0000023
GATTCAT305.4535083E-420.0000025
CGGAGCT305.4535083E-420.0000021
GTAACCA305.4535083E-420.0000023
CTTACAT305.4535083E-420.0000024
AAGTATA451.0149215E-620.06
GAAATGA408.217596E-620.01
AACGTCT250.00447581820.05
GCCTTTC250.00447581820.010
AATCCGA250.00447581820.09
Produced by FastQC (version 0.11.5)