FastQCFastQC Report
Fri 5 Apr 2019
000000000-G3JC4_l01_n01_cDNA2_A.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G3JC4_l01_n01_cDNA2_A.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437774
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAACTTC250.004479122320.0000022
CCTAAGG250.004479122320.0000024
TAGTTTG250.004479122320.0000026
GTGTAGA250.004479122320.00000212
CGGTGAT250.004479122320.0000026
AACTCGA250.004479122320.00000212
CCGTCGG305.4591376E-420.05
CTGCGGA652.4374458E-1020.01
CTGCGAC356.688493E-520.09
CTAAACC408.232104E-620.010
ATGACCT408.232104E-620.010
CCGGTGC305.4591376E-420.05
AATAGAG408.232104E-620.03
ACGAGGA356.688493E-520.01
ATTTGAG356.688493E-520.03
TAAGAAA356.688493E-520.06
AAAGCTC305.4591376E-420.06
CCCGACT305.4591376E-420.09
ACACTGA1500.019.3333341
TCGAATG1000.019.0000028
Produced by FastQC (version 0.11.5)