FastQCFastQC Report
Fri 5 Apr 2019
000000000-G3JC4_l01_n01_GDO2_F.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G3JC4_l01_n01_GDO2_F.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444684
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCACGAG250.004479231320.02
TCTGCCT408.232584E-620.02
CGGCGCT356.688795E-520.09
GATAAAC652.4374458E-1020.010
TTCCGGT451.0172353E-620.03
CACTGAG305.459325E-420.02
CCTCGAA850.020.06
AGTGATA305.459325E-420.07
AATGACC451.0172353E-620.09
GAGCGGC250.004479231320.07
CAGGACT501.2611417E-720.07
GCCTACA601.9535946E-920.03
CATCGAC1250.020.08
TAGGCTG451.0172353E-620.09
GGACCTC356.688795E-520.02
CCGAAGT356.688795E-520.03
GGACCCG250.004479231320.011
CGACTTG451.0172353E-620.011
AACTAGC250.004479231320.02
AAAGGAA356.688795E-520.09
Produced by FastQC (version 0.11.5)