FastQCFastQC Report
Fri 5 Apr 2019
000000000-G3JC4_l01_n01_GDO2_D.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G3JC4_l01_n01_GDO2_D.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397135
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAAGCTG250.00447840220.0000026
CATGCGA250.00447840220.0000022
AGGACGG250.00447840220.00000210
AATGGGA250.00447840220.00000211
ACTTAGA250.00447840220.0000024
ACGGGCG250.00447840220.0000022
GGGAAGT250.00447840220.0000022
AGCGACT250.00447840220.0000022
GTATAAA501.2602868E-720.0000028
CCGCGCA1000.020.0000029
CTCTAAA250.00447840220.0000022
AAGCTGC501.2602868E-720.0000027
AAACTGA305.4579123E-420.011
AAGACTA408.228939E-620.07
GGCCGAT703.092282E-1120.01
TAAGTTG305.4579123E-420.06
AAGCGGT551.5666956E-820.010
GCGTTGG551.5666956E-820.06
GCGTTCT305.4579123E-420.04
AAACGCC305.4579123E-420.010
Produced by FastQC (version 0.11.5)