FastQCFastQC Report
Fri 5 Apr 2019
000000000-G3JC4_l01_n01_GDO2_C.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G3JC4_l01_n01_GDO2_C.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences711285
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAGAC1000.020.0000025
GATGAAA1600.019.3751
CCACTGG1550.019.354849
TGGGCGT2600.019.230771
GGGTGAA1200.019.1666682
ATGAAGT1000.019.0000023
CCGGGAT1950.018.9743581
AGCTATC900.018.888893
GATCTAG1650.018.787881
TTCCGAA758.185452E-1118.6666667
ACTAGTT706.6029315E-1018.5714285
CTACCCA1400.018.5714281
TCGAGAC706.6029315E-1018.57142811
AAATGCC2050.018.5365851
CTAAACC1350.018.51851810
CATCGAC1300.018.4615388
GATGCTA1900.018.4210531
TTGAGTC604.2653483E-818.3333344
AGGGATG2350.018.2978731
CCACTAC3450.018.260871
Produced by FastQC (version 0.11.5)