FastQCFastQC Report
Fri 5 Apr 2019
000000000-G3JC4_l01_n01_GDO2_B.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-G3JC4_l01_n01_GDO2_B.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences583272
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGAATTA451.0183503E-620.09
ATTAGCT451.0183503E-620.011
ATGGCGA305.462128E-420.02
TGGCGAG305.462128E-420.03
CACTGAT1100.020.02
TGATTCG551.5705155E-820.010
GATGCGA250.004480878420.09
AATTAAC250.004480878420.013
ATGCGAG451.0183503E-620.03
GTGAATA250.004480878420.011
CTAGGGT250.004480878420.06
CGCTTGA356.693371E-520.011
TACAAAG356.693371E-520.06
CAATGGA2400.019.5833328
GAATGAA1450.019.3103451
ACACTGA2800.019.2857151
GACTAAC1050.019.047621
TGAAGCC801.0913936E-1118.755
TACATAC801.0913936E-1118.756
GCCGCAA758.185452E-1118.6666664
Produced by FastQC (version 0.11.5)