[2024-05-24 14:44:21,928] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-05-24 14:44:21,928] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-05-24 14:44:21,928] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-05-24 14:44:21,931] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-05-24 14:44:21,931] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-05-24 14:44:21,931] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-05-24 14:44:21,966] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-05-24 14:44:21,967] multiqc [INFO ] This is MultiQC v1.9 [2024-05-24 14:44:21,967] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-05-24 14:44:21,967] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/4e/3fd64b0f3fb63afdf34a61ac6c4bf9/1 [2024-05-24 14:44:21,967] multiqc [INFO ] Template : default [2024-05-24 14:44:21,967] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-05-24 14:44:21,967] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/4e/3fd64b0f3fb63afdf34a61ac6c4bf9/1 [2024-05-24 14:44:21,967] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-05-24 14:44:21,967] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-46967505/tmp4aaklv0o [2024-05-24 14:44:22,093] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n01_Miseq_Col-0_rep1_Mock_fastqc.html [2024-05-24 14:44:22,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n01_Miseq_Col-0_rep1_Mock_fastqc.html [2024-05-24 14:44:22,166] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search 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pattern filesize limit: 000000000-DP893_l01_n02_Miseq_HSm_rep1_Mock_fastqc.html [2024-05-24 14:44:25,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_HSm_rep1_Mock_fastqc.html [2024-05-24 14:44:25,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_HSm_rep1_flg22_fastqc.html [2024-05-24 14:44:25,877] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_HSm_rep1_flg22_fastqc.html [2024-05-24 14:44:25,946] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_HSm_rep2_Mock_fastqc.html [2024-05-24 14:44:25,953] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_HSm_rep2_Mock_fastqc.html [2024-05-24 14:44:26,015] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_HSm_rep2_flg22_fastqc.html [2024-05-24 14:44:26,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_HSm_rep2_flg22_fastqc.html [2024-05-24 14:44:26,085] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_HSm_rep3_Mock_fastqc.html [2024-05-24 14:44:26,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_HSm_rep3_Mock_fastqc.html [2024-05-24 14:44:26,154] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_HSm_rep3_flg22_fastqc.html [2024-05-24 14:44:26,160] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_HSm_rep3_flg22_fastqc.html [2024-05-24 14:44:26,226] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Kas-2_rep1_Mock_fastqc.html [2024-05-24 14:44:26,233] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Kas-2_rep1_Mock_fastqc.html [2024-05-24 14:44:26,297] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Kas-2_rep1_flg22_fastqc.html [2024-05-24 14:44:26,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Kas-2_rep1_flg22_fastqc.html [2024-05-24 14:44:26,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Kas-2_rep2_Mock_fastqc.html [2024-05-24 14:44:26,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Kas-2_rep2_Mock_fastqc.html [2024-05-24 14:44:26,438] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Kas-2_rep2_flg22_fastqc.html [2024-05-24 14:44:26,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Kas-2_rep2_flg22_fastqc.html [2024-05-24 14:44:26,513] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Kas-2_rep3_Mock_fastqc.html [2024-05-24 14:44:26,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Kas-2_rep3_Mock_fastqc.html [2024-05-24 14:44:26,583] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Kas-2_rep3_flg22_fastqc.html [2024-05-24 14:44:26,590] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Kas-2_rep3_flg22_fastqc.html [2024-05-24 14:44:26,656] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Nyl-2_rep1_Mock_fastqc.html [2024-05-24 14:44:26,664] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Nyl-2_rep1_Mock_fastqc.html [2024-05-24 14:44:26,729] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Nyl-2_rep1_flg22_fastqc.html [2024-05-24 14:44:26,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Nyl-2_rep1_flg22_fastqc.html [2024-05-24 14:44:26,797] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Nyl-2_rep2_Mock_fastqc.html [2024-05-24 14:44:26,803] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Nyl-2_rep2_Mock_fastqc.html [2024-05-24 14:44:26,868] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Nyl-2_rep2_flg22_fastqc.html [2024-05-24 14:44:26,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Nyl-2_rep2_flg22_fastqc.html [2024-05-24 14:44:26,942] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Nyl-2_rep3_Mock_fastqc.html [2024-05-24 14:44:26,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Nyl-2_rep3_Mock_fastqc.html [2024-05-24 14:44:27,010] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Nyl-2_rep3_flg22_fastqc.html [2024-05-24 14:44:27,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Nyl-2_rep3_flg22_fastqc.html [2024-05-24 14:44:27,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Pla-0_rep1_Mock_fastqc.html [2024-05-24 14:44:27,087] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Pla-0_rep1_Mock_fastqc.html [2024-05-24 14:44:27,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Pla-0_rep1_flg22_fastqc.html [2024-05-24 14:44:27,159] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Pla-0_rep1_flg22_fastqc.html [2024-05-24 14:44:27,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Pla-0_rep2_Mock_fastqc.html [2024-05-24 14:44:27,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Pla-0_rep2_Mock_fastqc.html [2024-05-24 14:44:27,296] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Pla-0_rep2_flg22_fastqc.html [2024-05-24 14:44:27,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Pla-0_rep2_flg22_fastqc.html [2024-05-24 14:44:27,365] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Pla-0_rep3_Mock_fastqc.html [2024-05-24 14:44:27,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Pla-0_rep3_Mock_fastqc.html [2024-05-24 14:44:27,437] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Pla-0_rep3_flg22_fastqc.html [2024-05-24 14:44:27,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_Miseq_Pla-0_rep3_flg22_fastqc.html [2024-05-24 14:44:27,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_undetermined_fastqc.html [2024-05-24 14:44:27,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP893_l01_n02_undetermined_fastqc.html [2024-05-24 14:44:27,575] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-24 14:44:27,581] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-24 14:44:27,581] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-24 14:44:27,581] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-24 14:44:27,581] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-24 14:44:27,582] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-24 14:44:27,582] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-24 14:44:27,601] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-24 14:44:28,894] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-05-24 14:44:28,895] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-05-24 14:44:28,921] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 37 samples (table) [2024-05-24 14:44:28,922] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-05-24 14:44:28,932] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-05-24 14:44:28,937] multiqc [DEBUG ] No samples found: conpair [2024-05-24 14:44:28,942] multiqc [DEBUG ] No samples found: peddy [2024-05-24 14:44:28,947] multiqc [DEBUG ] No samples found: somalier [2024-05-24 14:44:28,952] multiqc [DEBUG ] No samples found: methylQA [2024-05-24 14:44:28,962] multiqc [DEBUG ] No samples found: mosdepth [2024-05-24 14:44:28,967] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-05-24 14:44:28,970] multiqc [DEBUG ] No samples found: qualimap [2024-05-24 14:44:28,975] multiqc [DEBUG ] No samples found: preseq [2024-05-24 14:44:28,981] multiqc [DEBUG ] No samples found: quast [2024-05-24 14:44:28,986] multiqc [DEBUG ] No samples found: qorts [2024-05-24 14:44:28,991] multiqc [DEBUG ] No samples found: rna_seqc [2024-05-24 14:44:28,997] multiqc [DEBUG ] No samples found: rockhopper [2024-05-24 14:44:29,002] multiqc [DEBUG ] No samples found: rsem [2024-05-24 14:44:29,014] multiqc [DEBUG ] No samples found: rseqc [2024-05-24 14:44:29,018] multiqc [DEBUG ] No samples found: busco [2024-05-24 14:44:29,024] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-05-24 14:44:29,029] multiqc [DEBUG ] No samples found: disambiguate [2024-05-24 14:44:29,034] multiqc [DEBUG ] No samples found: supernova [2024-05-24 14:44:29,048] multiqc [DEBUG ] No samples found: deeptools [2024-05-24 14:44:29,053] multiqc [DEBUG ] No samples found: sargasso [2024-05-24 14:44:29,058] multiqc [DEBUG ] No samples found: verifybamid [2024-05-24 14:44:29,063] multiqc [DEBUG ] No samples found: mirtrace [2024-05-24 14:44:29,068] multiqc [DEBUG ] No samples found: happy [2024-05-24 14:44:29,073] multiqc [DEBUG ] No samples found: mirtop [2024-05-24 14:44:29,080] multiqc [DEBUG ] No samples found: homer [2024-05-24 14:44:29,085] multiqc [DEBUG ] No samples found: macs2 [2024-05-24 14:44:29,090] multiqc [DEBUG ] No samples found: theta2 [2024-05-24 14:44:29,095] multiqc [DEBUG ] No samples found: snpeff [2024-05-24 14:44:29,102] multiqc [DEBUG ] No samples found: gatk [2024-05-24 14:44:29,106] multiqc [DEBUG ] No samples found: htseq [2024-05-24 14:44:29,112] multiqc [DEBUG ] No samples found: bcftools [2024-05-24 14:44:29,117] multiqc [DEBUG ] No samples found: featureCounts [2024-05-24 14:44:29,124] multiqc [DEBUG ] No samples found: fgbio [2024-05-24 14:44:29,137] multiqc [DEBUG ] No samples found: dragen [2024-05-24 14:44:29,143] multiqc [DEBUG ] No samples found: dedup [2024-05-24 14:44:29,148] multiqc [DEBUG ] No samples found: damageprofiler [2024-05-24 14:44:29,171] multiqc [DEBUG ] No samples found: biobambam2 [2024-05-24 14:44:29,176] multiqc [DEBUG ] No samples found: mtnucratio [2024-05-24 14:44:29,178] multiqc [DEBUG ] No samples found: picard [2024-05-24 14:44:29,183] multiqc [DEBUG ] No samples found: prokka [2024-05-24 14:44:29,187] multiqc [DEBUG ] No samples found: samblaster [2024-05-24 14:44:29,197] multiqc [DEBUG ] No samples found: samtools [2024-05-24 14:44:29,202] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-05-24 14:44:29,208] multiqc [DEBUG ] No samples found: bamtools [2024-05-24 14:44:29,212] multiqc [DEBUG ] No samples found: jellyfish [2024-05-24 14:44:29,221] multiqc [DEBUG ] No samples found: vcftools [2024-05-24 14:44:29,226] multiqc [DEBUG ] No samples found: longranger [2024-05-24 14:44:29,231] multiqc [DEBUG ] No samples found: stacks [2024-05-24 14:44:29,237] multiqc [DEBUG ] No samples found: varscan2 [2024-05-24 14:44:29,252] multiqc [DEBUG ] No samples found: bbmap [2024-05-24 14:44:29,257] multiqc [DEBUG ] No samples found: bismark [2024-05-24 14:44:29,262] multiqc [DEBUG ] No samples found: biscuit [2024-05-24 14:44:29,267] multiqc [DEBUG ] No samples found: hicexplorer [2024-05-24 14:44:29,272] multiqc [DEBUG ] No samples found: hicup [2024-05-24 14:44:29,277] multiqc [DEBUG ] No samples found: hicpro [2024-05-24 14:44:29,282] multiqc [DEBUG ] No samples found: salmon [2024-05-24 14:44:29,287] multiqc [DEBUG ] No samples found: kallisto [2024-05-24 14:44:29,292] multiqc [DEBUG ] No samples found: slamdunk [2024-05-24 14:44:29,297] multiqc [DEBUG ] No samples found: star [2024-05-24 14:44:29,301] multiqc [DEBUG ] No samples found: hisat2 [2024-05-24 14:44:29,306] multiqc [DEBUG ] No samples found: tophat [2024-05-24 14:44:29,312] multiqc [DEBUG ] No samples found: bowtie2 [2024-05-24 14:44:29,316] multiqc [DEBUG ] No samples found: bowtie1 [2024-05-24 14:44:29,321] multiqc [DEBUG ] No samples found: snpsplit [2024-05-24 14:44:29,327] multiqc [DEBUG ] No samples found: kat [2024-05-24 14:44:29,331] multiqc [DEBUG ] No samples found: leehom [2024-05-24 14:44:29,336] multiqc [DEBUG ] No samples found: adapterRemoval [2024-05-24 14:44:29,341] multiqc [DEBUG ] No samples found: clipandmerge [2024-05-24 14:44:29,346] multiqc [DEBUG ] No samples found: cutadapt [2024-05-24 14:44:29,350] multiqc [DEBUG ] No samples found: flexbar [2024-05-24 14:44:29,355] multiqc [DEBUG ] No samples found: kaiju [2024-05-24 14:44:29,360] multiqc [DEBUG ] No samples found: kraken [2024-05-24 14:44:29,366] multiqc [DEBUG ] No samples found: malt [2024-05-24 14:44:29,371] multiqc [DEBUG ] No samples found: trimmomatic [2024-05-24 14:44:29,376] multiqc [DEBUG ] No samples found: sickle [2024-05-24 14:44:29,381] multiqc [DEBUG ] No samples found: skewer [2024-05-24 14:44:29,385] multiqc [DEBUG ] No samples found: sortmerna [2024-05-24 14:44:29,390] multiqc [DEBUG ] No samples found: biobloomtools [2024-05-24 14:44:29,395] multiqc [DEBUG ] No samples found: fastq_screen [2024-05-24 14:44:29,400] multiqc [DEBUG ] No samples found: afterqc [2024-05-24 14:44:29,405] multiqc [DEBUG ] No samples found: fastp [2024-05-24 14:44:29,693] multiqc.modules.fastqc.fastqc [INFO ] Found 74 reports [2024-05-24 14:44:30,253] multiqc [DEBUG ] No samples found: pycoqc [2024-05-24 14:44:30,259] multiqc [DEBUG ] No samples found: minionqc [2024-05-24 14:44:30,263] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-05-24 14:44:30,268] multiqc [DEBUG ] No samples found: clusterflow [2024-05-24 14:44:30,273] multiqc [DEBUG ] No samples found: bcl2fastq [2024-05-24 14:44:30,279] multiqc [DEBUG ] No samples found: interop [2024-05-24 14:44:30,284] multiqc [DEBUG ] No samples found: ivar [2024-05-24 14:44:30,289] multiqc [DEBUG ] No samples found: flash [2024-05-24 14:44:30,294] multiqc [DEBUG ] No samples found: seqyclean [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-05-24 14:44:30,294] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-05-24 14:44:30,295] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-05-24 14:44:30,295] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-05-24 14:44:30,295] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-05-24 14:44:30,295] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-05-24 14:44:30,295] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-05-24 14:44:30,295] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-05-24 14:44:30,295] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-05-24 14:44:30,295] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-05-24 14:44:30,295] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-05-24 14:44:30,295] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-05-24 14:44:30,295] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-05-24 14:44:30,295] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-05-24 14:44:30,382] multiqc [INFO ] Compressing plot data [2024-05-24 14:44:31,283] multiqc [INFO ] Report : multiqc_report.html [2024-05-24 14:44:31,284] multiqc [INFO ] Data : multiqc_data [2024-05-24 14:44:31,284] multiqc [DEBUG ] Moving data file from '/state/partition1/job-46967505/tmp4aaklv0o/multiqc_data' to '/vast/gencore/GENEFLOW/work/4e/3fd64b0f3fb63afdf34a61ac6c4bf9/1/multiqc_data' [2024-05-24 14:44:31,465] multiqc [INFO ] MultiQC complete