[2024-05-11 07:29:16,184] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-05-11 07:29:16,184] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-05-11 07:29:16,184] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-05-11 07:29:16,187] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-05-11 07:29:16,187] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-05-11 07:29:16,187] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-05-11 07:29:16,218] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-05-11 07:29:16,218] multiqc [INFO ] This is MultiQC v1.9 [2024-05-11 07:29:16,218] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-05-11 07:29:16,218] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/1b/dec7900e64551f3fc27fb1692a01d5/1 [2024-05-11 07:29:16,218] multiqc [INFO ] Template : default [2024-05-11 07:29:16,218] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-05-11 07:29:16,218] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/1b/dec7900e64551f3fc27fb1692a01d5/1 [2024-05-11 07:29:16,219] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-05-11 07:29:16,219] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-46384678/tmp5cebhgtn [2024-05-11 07:29:16,372] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n01_A_thaliana_001_fastqc.html [2024-05-11 07:29:16,381] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n01_A_thaliana_001_fastqc.html [2024-05-11 07:29:16,451] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern 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hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_251_fastqc.html [2024-05-11 07:29:52,468] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_251_fastqc.html [2024-05-11 07:29:52,531] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_253_fastqc.html [2024-05-11 07:29:52,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_253_fastqc.html [2024-05-11 07:29:52,600] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_254_fastqc.html [2024-05-11 07:29:52,606] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_254_fastqc.html [2024-05-11 07:29:52,669] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_255_fastqc.html [2024-05-11 07:29:52,676] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_255_fastqc.html [2024-05-11 07:29:52,718] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_256_fastqc.html [2024-05-11 07:29:52,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_256_fastqc.html [2024-05-11 07:29:52,791] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_257_fastqc.html [2024-05-11 07:29:52,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_257_fastqc.html [2024-05-11 07:29:52,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_258_fastqc.html [2024-05-11 07:29:52,869] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_258_fastqc.html [2024-05-11 07:29:52,934] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_259_fastqc.html [2024-05-11 07:29:52,941] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_259_fastqc.html [2024-05-11 07:29:53,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_260_fastqc.html [2024-05-11 07:29:53,010] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_260_fastqc.html [2024-05-11 07:29:53,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_261_fastqc.html [2024-05-11 07:29:53,080] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_D_verna_261_fastqc.html [2024-05-11 07:29:53,143] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_ath_dve_017_fastqc.html [2024-05-11 07:29:53,149] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_ath_dve_017_fastqc.html [2024-05-11 07:29:53,215] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_ath_dve_021_fastqc.html [2024-05-11 07:29:53,222] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_ath_dve_021_fastqc.html [2024-05-11 07:29:53,291] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_ath_dve_033_fastqc.html [2024-05-11 07:29:53,300] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_ath_dve_033_fastqc.html [2024-05-11 07:29:53,364] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_undetermined_fastqc.html [2024-05-11 07:29:53,371] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-DP6Y2_l01_n02_undetermined_fastqc.html [2024-05-11 07:29:53,432] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-11 07:29:53,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-11 07:29:53,438] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-11 07:29:53,438] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-11 07:29:53,438] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-11 07:29:53,438] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-11 07:29:53,438] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-11 07:29:53,461] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-05-11 07:29:54,886] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-05-11 07:29:54,888] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-05-11 07:29:55,013] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 259 samples (table) [2024-05-11 07:29:55,014] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-05-11 07:29:55,024] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-05-11 07:29:55,029] multiqc [DEBUG ] No samples found: conpair [2024-05-11 07:29:55,035] multiqc [DEBUG ] No samples found: peddy [2024-05-11 07:29:55,040] multiqc [DEBUG ] No samples found: somalier [2024-05-11 07:29:55,046] multiqc [DEBUG ] No samples found: methylQA [2024-05-11 07:29:55,055] multiqc [DEBUG ] No samples found: mosdepth [2024-05-11 07:29:55,060] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-05-11 07:29:55,063] multiqc [DEBUG ] No samples found: qualimap [2024-05-11 07:29:55,069] multiqc [DEBUG ] No samples found: preseq [2024-05-11 07:29:55,075] multiqc [DEBUG ] No samples found: quast [2024-05-11 07:29:55,080] multiqc [DEBUG ] No samples found: qorts [2024-05-11 07:29:55,086] multiqc [DEBUG ] No samples found: rna_seqc [2024-05-11 07:29:55,091] multiqc [DEBUG ] No samples found: rockhopper [2024-05-11 07:29:55,096] multiqc [DEBUG ] No samples found: rsem [2024-05-11 07:29:55,110] multiqc [DEBUG ] No samples found: rseqc [2024-05-11 07:29:55,115] multiqc [DEBUG ] No samples found: busco [2024-05-11 07:29:55,121] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-05-11 07:29:55,126] multiqc [DEBUG ] No samples found: disambiguate [2024-05-11 07:29:55,131] multiqc [DEBUG ] No samples found: supernova [2024-05-11 07:29:55,148] multiqc [DEBUG ] No samples found: deeptools [2024-05-11 07:29:55,153] multiqc [DEBUG ] No samples found: sargasso [2024-05-11 07:29:55,158] multiqc [DEBUG ] No samples found: verifybamid [2024-05-11 07:29:55,164] multiqc [DEBUG ] No samples found: mirtrace [2024-05-11 07:29:55,169] multiqc [DEBUG ] No samples found: happy [2024-05-11 07:29:55,174] multiqc [DEBUG ] No samples found: mirtop [2024-05-11 07:29:55,182] multiqc [DEBUG ] No samples found: homer [2024-05-11 07:29:55,187] multiqc [DEBUG ] No samples found: macs2 [2024-05-11 07:29:55,192] multiqc [DEBUG ] No samples found: theta2 [2024-05-11 07:29:55,198] multiqc [DEBUG ] No samples found: snpeff [2024-05-11 07:29:55,205] multiqc [DEBUG ] No samples found: gatk [2024-05-11 07:29:55,211] multiqc [DEBUG ] No samples found: htseq [2024-05-11 07:29:55,218] multiqc [DEBUG ] No samples found: bcftools [2024-05-11 07:29:55,223] multiqc [DEBUG ] No samples found: featureCounts [2024-05-11 07:29:55,230] multiqc [DEBUG ] No samples found: fgbio [2024-05-11 07:29:55,243] multiqc [DEBUG ] No samples found: dragen [2024-05-11 07:29:55,248] multiqc [DEBUG ] No samples found: dedup [2024-05-11 07:29:55,254] multiqc [DEBUG ] No samples found: damageprofiler [2024-05-11 07:29:55,280] multiqc [DEBUG ] No samples found: biobambam2 [2024-05-11 07:29:55,285] multiqc [DEBUG ] No samples found: mtnucratio [2024-05-11 07:29:55,287] multiqc [DEBUG ] No samples found: picard [2024-05-11 07:29:55,292] multiqc [DEBUG ] No samples found: prokka [2024-05-11 07:29:55,297] multiqc [DEBUG ] No samples found: samblaster [2024-05-11 07:29:55,306] multiqc [DEBUG ] No samples found: samtools [2024-05-11 07:29:55,311] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-05-11 07:29:55,317] multiqc [DEBUG ] No samples found: bamtools [2024-05-11 07:29:55,322] multiqc [DEBUG ] No samples found: jellyfish [2024-05-11 07:29:55,331] multiqc [DEBUG ] No samples found: vcftools [2024-05-11 07:29:55,336] multiqc [DEBUG ] No samples found: longranger [2024-05-11 07:29:55,342] multiqc [DEBUG ] No samples found: stacks [2024-05-11 07:29:55,347] multiqc [DEBUG ] No samples found: varscan2 [2024-05-11 07:29:55,364] multiqc [DEBUG ] No samples found: bbmap [2024-05-11 07:29:55,369] multiqc [DEBUG ] No samples found: bismark [2024-05-11 07:29:55,375] multiqc [DEBUG ] No samples found: biscuit [2024-05-11 07:29:55,380] multiqc [DEBUG ] No samples found: hicexplorer [2024-05-11 07:29:55,385] multiqc [DEBUG ] No samples found: hicup [2024-05-11 07:29:55,391] multiqc [DEBUG ] No samples found: hicpro [2024-05-11 07:29:55,395] multiqc [DEBUG ] No samples found: salmon [2024-05-11 07:29:55,401] multiqc [DEBUG ] No samples found: kallisto [2024-05-11 07:29:55,407] multiqc [DEBUG ] No samples found: slamdunk [2024-05-11 07:29:55,411] multiqc [DEBUG ] No samples found: star [2024-05-11 07:29:55,417] multiqc [DEBUG ] No samples found: hisat2 [2024-05-11 07:29:55,422] multiqc [DEBUG ] No samples found: tophat [2024-05-11 07:29:55,427] multiqc [DEBUG ] No samples found: bowtie2 [2024-05-11 07:29:55,433] multiqc [DEBUG ] No samples found: bowtie1 [2024-05-11 07:29:55,438] multiqc [DEBUG ] No samples found: snpsplit [2024-05-11 07:29:55,443] multiqc [DEBUG ] No samples found: kat [2024-05-11 07:29:55,448] multiqc [DEBUG ] No samples found: leehom [2024-05-11 07:29:55,453] multiqc [DEBUG ] No samples found: adapterRemoval [2024-05-11 07:29:55,457] multiqc [DEBUG ] No samples found: clipandmerge [2024-05-11 07:29:55,462] multiqc [DEBUG ] No samples found: cutadapt [2024-05-11 07:29:55,467] multiqc [DEBUG ] No samples found: flexbar [2024-05-11 07:29:55,472] multiqc [DEBUG ] No samples found: kaiju [2024-05-11 07:29:55,477] multiqc [DEBUG ] No samples found: kraken [2024-05-11 07:29:55,482] multiqc [DEBUG ] No samples found: malt [2024-05-11 07:29:55,487] multiqc [DEBUG ] No samples found: trimmomatic [2024-05-11 07:29:55,492] multiqc [DEBUG ] No samples found: sickle [2024-05-11 07:29:55,497] multiqc [DEBUG ] No samples found: skewer [2024-05-11 07:29:55,502] multiqc [DEBUG ] No samples found: sortmerna [2024-05-11 07:29:55,507] multiqc [DEBUG ] No samples found: biobloomtools [2024-05-11 07:29:55,512] multiqc [DEBUG ] No samples found: fastq_screen [2024-05-11 07:29:55,517] multiqc [DEBUG ] No samples found: afterqc [2024-05-11 07:29:55,522] multiqc [DEBUG ] No samples found: fastp [2024-05-11 07:29:57,356] multiqc.modules.fastqc.fastqc [INFO ] Found 518 reports [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_025' [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_026' [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_027' [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_028' [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_029' [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_030' [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_031' [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_064' [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_065' [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_066' [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_067' [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_068' [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_069' [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_070' [2024-05-11 07:29:57,368] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_A_thaliana_071' [2024-05-11 07:29:57,369] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n01_D_verna_255' [2024-05-11 07:29:57,369] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_025' [2024-05-11 07:29:57,369] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_026' [2024-05-11 07:29:57,369] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_027' [2024-05-11 07:29:57,369] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_028' [2024-05-11 07:29:57,369] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_029' [2024-05-11 07:29:57,369] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_030' [2024-05-11 07:29:57,369] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_031' [2024-05-11 07:29:57,369] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_064' [2024-05-11 07:29:57,370] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_065' [2024-05-11 07:29:57,370] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_066' [2024-05-11 07:29:57,370] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_067' [2024-05-11 07:29:57,370] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_068' [2024-05-11 07:29:57,370] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_069' [2024-05-11 07:29:57,370] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_070' [2024-05-11 07:29:57,370] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_A_thaliana_071' [2024-05-11 07:29:57,370] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-DP6Y2_l01_n02_D_verna_255' [2024-05-11 07:30:36,121] multiqc [DEBUG ] No samples found: pycoqc [2024-05-11 07:30:36,127] multiqc [DEBUG ] No samples found: minionqc [2024-05-11 07:30:36,133] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-05-11 07:30:36,138] multiqc [DEBUG ] No samples found: clusterflow [2024-05-11 07:30:36,144] multiqc [DEBUG ] No samples found: bcl2fastq [2024-05-11 07:30:36,150] multiqc [DEBUG ] No samples found: interop [2024-05-11 07:30:36,155] multiqc [DEBUG ] No samples found: ivar [2024-05-11 07:30:36,161] multiqc [DEBUG ] No samples found: flash [2024-05-11 07:30:36,166] multiqc [DEBUG ] No samples found: seqyclean [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-05-11 07:30:36,166] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-05-11 07:30:36,167] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-05-11 07:30:36,167] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-05-11 07:30:36,167] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-05-11 07:30:36,167] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-05-11 07:30:36,167] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-05-11 07:30:36,167] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-05-11 07:30:36,167] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-05-11 07:30:36,167] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-05-11 07:30:36,167] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-05-11 07:30:36,167] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-05-11 07:30:36,167] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-05-11 07:30:36,167] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-05-11 07:30:36,167] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-05-11 07:30:36,167] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-05-11 07:30:36,170] multiqc.plots.table [DEBUG ] Plotting beeswarm instead of table, 518 samples [2024-05-11 07:30:36,173] multiqc [INFO ] Compressing plot data [2024-05-11 07:30:36,481] multiqc [INFO ] Report : multiqc_report.html [2024-05-11 07:30:36,481] multiqc [INFO ] Data : multiqc_data [2024-05-11 07:30:36,481] multiqc [DEBUG ] Moving data file from '/state/partition1/job-46384678/tmp5cebhgtn/multiqc_data' to '/vast/gencore/GENEFLOW/work/1b/dec7900e64551f3fc27fb1692a01d5/1/multiqc_data' [2024-05-11 07:30:36,728] multiqc [INFO ] MultiQC complete