FastQCFastQC Report
Sat 11 May 2024
000000000-DP6Y2_l01_n01_A_thaliana_042.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-DP6Y2_l01_n01_A_thaliana_042.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1531
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT20.13063357282821686No Hit
CTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGGACCTACGGGCCAAGG20.13063357282821686No Hit
GATCTCATGTGTATGATTGAGTATAAGAACTTAAACCGCAACCGCATCTT20.13063357282821686No Hit
GGATACAATTCTTACGCCTTTAAGATCCGGTTGCGGTTTAAGTTCTTATA20.13063357282821686No Hit
GAACAGGACCTATCACAAGAATATTTTTTTTATTGGGACGATAATTCTGA20.13063357282821686No Hit
GTGTAGCATCAGATCCTAAAGACAGTAAGTCTTTTTCTTTTTTATGAAGT20.13063357282821686No Hit
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC20.13063357282821686No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)