FastQCFastQC Report
Fri 31 Jan 2020
000000000-CHT9C_l01_n01_NEGATIVE_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-CHT9C_l01_n01_NEGATIVE_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTTATCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAA31.7751479289940828No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21.183431952662722No Hit
TTGTAGAACAATTTCATCGGTAACTCCTTTTGTCTGTGGTTTAAAGTATG21.183431952662722No Hit
GCGGAGGCCATGGAGGTTGCTAATCAGACTAGGCAGATGGTACATGCAAT21.183431952662722No Hit
CATGTCAGCTGATTCATTTACTCCAGACACTCCAAAGCTGGGTAGCTCCA10.591715976331361No Hit
ATGTACCATCTGCCTAGTCTGATTAGCAACCTCCATGGCCTCCGCTGCCT10.591715976331361No Hit
CTCCAGGATTGCAAAATTTCTCCTTTGATGGTTGCATACATGTTGGAGAG10.591715976331361No Hit
GACAAGAGGATAACGGAAATGATTCCTGAGAGAAATGAGCAAGGACAAAC10.591715976331361No Hit
TCTCGGTACCACTAGATTTCCAGTTGCTTCGAATGTTATTTTGTCTCCCG10.591715976331361No Hit
GCCTGTCTTATCATTAGGGCGTGGATTGTCTCCGAAAATCCCACTGCATA10.591715976331361No Hit
GCAAATGAGATTGCAGAGAAGGGCGGAAAAAAGGTCATTTTGCTGTCAAA10.591715976331361No Hit
GAGCAAAAGCAGGAGTTTAAAATGAATCCAAATCAGAAAATAATAACCAT10.591715976331361No Hit
GTTCATGCTCATGCCTAGGCAAAAGATAATAGGCCCTCTTTGCGTGCGAT10.591715976331361No Hit
GTGAATGCCCCATAGCACGAGGACTTCTTTCCCTTTATCATTAATGTAGG10.591715976331361No Hit
ATTATGAGGAGCTAAGAGAGCAATTGAGCTCAGTGTCATCATTTGAAAGG10.591715976331361No Hit
ACTAAGGGCTTTCACTGAGGAGGGAGCAATAGTTGGAGAAATTTCACCAT10.591715976331361No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGG10.591715976331361No Hit
GTAATCCACAATATCAGGTGCAAGATCCCAATGATATTTGCTGCAATGAC10.591715976331361No Hit
ATCCACTAATCAGGCATGAAAACAGAATGGTGCTGGCTAGCACTACGGCA10.591715976331361No Hit
GGCCTGGACAGTGGTGAACAGTATATGTAACACAACAGGGGTAGAGAAGC10.591715976331361No Hit
TGGAATTTCCAGTATGGTGGAGGCCATGGTTTCCAGGGCCCGAATTGATG10.591715976331361No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCGGGGG10.591715976331361No Hit
ACTCAAGATTTGAGTCAGTCGCTTGGTCAGCAAGTGCTTGTCATGATGGC10.591715976331361No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGC10.591715976331361No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCCGTCGGT10.591715976331361No Hit
GATCCTGGGAAATCCAGAGTGTGAATCACTCTCCACAGCAAGCTCATGGT10.591715976331361No Hit
TTTTCAAGAAGATCATCTCTTAGACCAGTACTGGAACTAGGATGAGTCCC10.591715976331361No Hit
CTTCTGGCTTTGCACTTTCCATCATTCTTATAACTTCTGTTCGCATCTCG10.591715976331361No Hit
GGGAAAGAAGTCCTCGTGCTATGGGGCATTCACCATCCATCTACTAGTGC10.591715976331361No Hit
GTTACAGTAGTTATCAAGATGGCAATTTGCATGAAGAAGCATATTGTGGA10.591715976331361No Hit
CCAATAAAGATGCTAGTGGATCTGCTGATACTGCAGCTCTTCTCACTATG10.591715976331361No Hit
CTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGGCCCT10.591715976331361No Hit
GGGTGATGCCCCATTCCTTGATCGGCTCCGCCGAGATCAAAAGTCCTTAA10.591715976331361No Hit
TTCGGAGACAATCCACGCCCTAATGATAAGACAGGCAGTTGTGGTCCAGT10.591715976331361No Hit
AAACAGAACACACCAATACTCAGAAAAGGGAAAGTGGACGACAAACACAG10.591715976331361No Hit
GTGTTATTTGAATGCACGTTGTTTAGTGTTGTTCCCTGTCCAAGGGCAAA10.591715976331361No Hit
GTTCTCAAACAAAATGGCAAGACTAGGGAAAGGGTACATGTTCGAGAGTA10.591715976331361No Hit
AAAGAGAATTGGTCCGTAAAACAAGGTTTCTCCCAGTAGCCGGCGGAACA10.591715976331361No Hit
AGGAAGGCACGATCGGGTTCGTTGCCTTTTCGTCCGAGAGCTCGAAGACT10.591715976331361No Hit
CTTGCATATATCCACGGCTTGCTCTTCTGTTGGGTTCTGCCTAAGGAGGT10.591715976331361No Hit
CTGCTGGTTTGGGGCATATTTCCTTCTCTATGGTGGTGTTGGTCAGATAC10.591715976331361No Hit
ATTAAAGACAGGAGCCCATATCGAAACCTAATGAGCTGTCCTATTGGTGA10.591715976331361No Hit
ACTATGACTTGCCTATTTATCTGCAATTTGGCCTTAGGGTTGGACCAGCC10.591715976331361No Hit
GTCTAAATCCGATATTCGGGATTACAGCTTGTTGGCTTCTTTTGGTAGAT10.591715976331361No Hit
TTTAAAGATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTTTCTATCA10.591715976331361No Hit
TAAGAGTGCATGAGGGATATGACGAGTTCACAATGGTTGGGAGAAGAGCA10.591715976331361No Hit
CCAGCTGTGCCTTCATCTGGGTCTTCAGTTAAAGTGCCAGCATCCTTTCC10.591715976331361No Hit
GCCAAGTGGTCAGCCTGATGAGACCAAATGAAAACCCAGCTCACAAGAGT10.591715976331361No Hit
ATTTAAAGATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTTTCTATC10.591715976331361No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGTGGA10.591715976331361No Hit
GTGAGAACCAATGGAACCTCCAAGATCAAGATGAAATGGGGCATGGAAAT10.591715976331361No Hit
AAACTAACAAGTTTGCTGCAATATGCACACATTTGGAAGTTTGTTTCATA10.591715976331361No Hit
CACCATTACCTTCTCTTCCAGGACATACTTATGAGGATGTCAAAAATGCA10.591715976331361No Hit
CTATATGAACTGCTAGGGAAAAATTTCTCGAATAGATTGCAGCACTTCTG10.591715976331361No Hit
ATCATACATTTGCTTCCTGGTGTCCTGATGGTCACCCACAAAGCCCACAC10.591715976331361No Hit
CATCGAAGCCATGGCGTCTCAAGGCACCAAACGATCATATGAACAAATGG10.591715976331361No Hit
GTCCACGATTGCAATACAACTTGTCAAACACCCAAGGGTGCTATAAACAC10.591715976331361No Hit
ATTCCCCAGTTCTGGAAAAGCACTTTTGCATCTTTTTGGAAATGCCTCAA10.591715976331361No Hit
AATGGTTCCCTTATGACAAAAACATGACCTCTAGATCCAATCCTTATTCC10.591715976331361No Hit
TTTTAGGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAG10.591715976331361No Hit
CAGTAATCCACAATATCAGGTGCAAGATCCCAATGATATTTGCTGCAATG10.591715976331361No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGG10.591715976331361No Hit
TTCTTATAACTTCTGTTCGCATGTCGGATGTCCGTCCTTCATTGTTCCCG10.591715976331361No Hit
GTATCAAGGTCTCTAATCGGTTAAAGATTACACTGAAGTTCGCTTTCAGT10.591715976331361No Hit
CACCACTCTCTCCATTTTGTGTGACTCCTGTAGACGTGAAGCCTTCTGTG10.591715976331361No Hit
GTATGGTAGTGCGTTGCTGAACAAAAAAAAAGCCGCTAACGAAAAGTTAG10.591715976331361No Hit
GTTAGGGGCGATCTGAACTTTGTCAATAGGGCAAACCAGCGACTGAACCC10.591715976331361No Hit
GCGAAAGCAGGGGAAAACAAAAGCAACAAAAATGAAGGCAATACTAGTAG10.591715976331361No Hit
GGCTTGCCCAGAACGGACTTTGCCGGGTCGTAGTAGCGGTAAGCCAGATC10.591715976331361No Hit
ATGTAAATAGCCGATAACAGGTGTAGCTTCTTTTATGATTTCTCCGTCAA10.591715976331361No Hit
GGACCACAAGAGCCCAAGCACCGAGCGCCCTCAGGTGAGCTCCTGGTGTT10.591715976331361No Hit
GTATAATAATGATATAATGTTAGCGATTACATTTTAAATATTATGAAAGT10.591715976331361No Hit
TTGCTGAGCTTTGGGTATGAATTTCCTTTTTTAACTAGCCATATTAAATT10.591715976331361No Hit
AACACATCCCCCTTGGAACCGATTCTTACACTGTTGTCTTTACTGTATAT10.591715976331361No Hit
ATCCTGTTGTATATGAGGCCCATGCAACTGGCAAGTGCACCAGTTGAATA10.591715976331361No Hit
ATGTGTATCTGTAGTCTTTGATGAACAATTGAAGAGCCATCTGGGCCGTT10.591715976331361No Hit
CAGAATGAGTGCTGACCGTGCCAGGAAAATGAGGTCTTCAATCTCAGCGT10.591715976331361No Hit
GCACTAGTAGATGGATGGTGAATGCCCCATAGCACGAGGACTTCCTTCCC10.591715976331361No Hit
GAGTGATTCACACTCTGGATTTCCCAGGATCCAGCCAGCAATGTTACATT10.591715976331361No Hit
ACATAATGGACTCCAACACCATGTCAAGCTTTCAGGTAGACTGTTTCCTT10.591715976331361No Hit
GGATGAACAAGGACAAACTCTATGGAGTAAAATGAGTGATGCTGGATCAG10.591715976331361No Hit
GGATCAGACCGAGTGATGGTATCACCTCTGGCCGTAACATGGTGGAATAG10.591715976331361No Hit
GGACAAATCTTCTGGCTTTGCACTTTCCATTATTCTTATAACTTCTGTTC10.591715976331361No Hit
GCAACATGCACTCACTTGGAGGTGTGTTTCATGTATTCAGATTTCCATTT10.591715976331361No Hit
GCCTAGTGGTCAGCCTGATGAGACCAAATGAAAACCCAGCTCACAAGAGT10.591715976331361No Hit
CTTATTCGTCATCAATGATGTGGGAGATCAATGGCCCTGAGTCAGTGCTA10.591715976331361No Hit
AAGTAAATTCTGTTATTGAAAAGATGAATACACAGTTCACAGCAGTAGGT10.591715976331361No Hit
CTATGCAAACTAAGAGGGGTAGCCCCATTGCATTTGGGTAAATGTAACAT10.591715976331361No Hit
TTTCAAACCGTATTTAAAGCGACGATAAATACATTTGAAAAAAAGACGAT10.591715976331361No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGCGGGGGCCCGGT10.591715976331361No Hit
AATAAGGAGAGTTTGGCGCCAAGCAAACAATGGCGAAGATGCAACAGCAG10.591715976331361No Hit
CAGCCGTAGCGTAAAATTCAGGGAAACTCTTTTACAAGCCGCTAACTTTT10.591715976331361No Hit
ACGCAAGGAACTGAGAAGTTGACAATAACTTATTCGTCATCAATGATGTG10.591715976331361No Hit
TGCTAATGCCTAGGCAAAAGATAATAGGCCCTCTTTGCGTGCGATTGGAC10.591715976331361No Hit
CTCTTACCAGTATCCTCAACCCTGATCCTCTCACATTCACAGTCAATGAG10.591715976331361No Hit
GTCTCTGCAGACACATCTGACACCAGGATATCGAGGATAGCAAGAGCACT10.591715976331361No Hit
GCATTAAGCATCAATGAACTGAGTAACCTTGCAAAAGGGGAAAAGGCTAA10.591715976331361No Hit
GAAATAGATGGGGTAAAGCTGGAATCAACAAGGATTTACCAGATTTTGGC10.591715976331361No Hit
GAGCAACAGCTATTCTCAGAAAGGCAACCAGGAGATTGATCCAGTTGATA10.591715976331361No Hit
GGTCCAATCGCACGCAAAGAGGGCCTATTATCTTTTGCCTAGGCATGAGC10.591715976331361No Hit
GTAACATGGTGGAATAGGAATGGCCCAACAACAAGTACAGTTCATTACCC10.591715976331361No Hit
CCTCATATACAACAGGATGGGAACAGTGACCACAGAAGCTGCTTTTGGCT10.591715976331361No Hit
CGCAGAGACTGGAAAGTGTCTTTGCAGGAAAGAACACAGATCTTGAGGCT10.591715976331361No Hit
CTCCTCTGCATTGTCTCCGAAGAAATAAGACCCTTCATTACTCATGTCAA10.591715976331361No Hit
GGTTTAAAGTATGGTAGTGCGTTGCTGAACAAAAAAAAAGCCGCTAACGA10.591715976331361No Hit
ATTGGAGCCTTTCCAGTTGTCTCTGCAGACACATCTGACACCAGGATATC10.591715976331361No Hit
TTCTCACAAGGATCAAGTTGCTAAATGTCCATAGAGTGTGACATCTGTCT10.591715976331361No Hit
TCTTTTTAACTTGCCTCTCTCTGCATCTTTGGTCATCGTATTTAATGTCA10.591715976331361No Hit
CCACATATCAGAGAACAAGAGCGCTTGTTCGCACCGGAATGGATCCAAGA10.591715976331361No Hit
CTTAGAAGATATATATGCAGAATTAGGCTTAACATTAAACTATTCCGGAA10.591715976331361No Hit
GTTAGTGGATGGGCTATATACAGTAAAGACAACAGTGTAAGAATCGGTTC10.591715976331361No Hit
ATATAGGACTTCTTTTTGCTCATGTTGATTCCCACTAACTTGCAGGTCCT10.591715976331361No Hit
GCCTTCCTCCACTCCCCTGGGTGACTCTCCGATTGGCCATGTTTCCGATT10.591715976331361No Hit
GAGGATAATGAACCAAGTGGGTATGCACAAACAGACTGTGTTCTAGAGGC10.591715976331361No Hit
CTTTTCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCACTACCATACTTTA10.591715976331361No Hit
GTATTATGCCAGCACTTCAGGCGATGTTTCCAAACTTAAGAAAGAGTATA10.591715976331361No Hit
ACATTATGGGTGCCATGCTCAGGATGTTTCTGAACCACTCGGGTTGATTT10.591715976331361No Hit
CGACAATGTGATGGGAATGATCGGAATACTGCCCGACATGACCCCAAGCA10.591715976331361No Hit
TTCATATCATGCTCCCCCTTGGAATGCAGAACCTTCTTCTTGACTCAAGG10.591715976331361No Hit
ATTTTTGACACTTTCCATGCACGTGTTATCGCATTTGTGGTAAAATTCAA10.591715976331361No Hit
AGCAAAAGCAGGAGTTTAAAATGAATCCAAATCAAAAGATAATAACCATT10.591715976331361No Hit
GGTTTGTAGAACAATTTCATCGGTAACTCCTTTTGTCTGTGGTTTAAAGT10.591715976331361No Hit
GTGGGATTCTTCAAGGAAGGCCATAGCCTCCAGGACACAGTCTGTTTGTG10.591715976331361No Hit
TAACTGCTCTATCCATGTTGTTCGGGTCCCCATTCCCATTTAGGGCATTT10.591715976331361No Hit
ATGTTAACATCAGCAACACCAACTTTGCTGCTGGACAGTCAGTGGTTTCC10.591715976331361No Hit
GTACTATTGTCTCCCGAAGAAGTCAGTGAAACGCAAGGAACTGAGAAGTT10.591715976331361No Hit
CCTCATAATCGATGAAATCTCCTGGGTAACACGTTCCATTGTCTGAACTA10.591715976331361No Hit
GTTGTATATGAGGCCCATGCAACTGGCAAGTGCACCAGTTGAATAGCTTA10.591715976331361No Hit
ATAATCACTGAGTTTGAGTTCAGTGCACATTTGGATGTAGAATCTCCCGA10.591715976331361No Hit
GGGGTGGACAGGGATGGTAGATGGATGGTACGGTTATCACCATCAAAATG10.591715976331361No Hit
GTGCTATCATTCCATTCAAGTCCTCCGATGAGGACCCCAATTGCATTTTT10.591715976331361No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGAGGGAAGACGGGGGG10.591715976331361No Hit
CATTGGGATCTTGCACTTGATATTGTGGATTCTTGATCGTCTTTTTTTCA10.591715976331361No Hit
GGCCAAAACCATTCTGTTCTCATGTTTTATTAATGGATTGGTTGTTGCCA10.591715976331361No Hit
GAATCAGGAAGGCTAATAGATTTCCTCAAGGATGAGATGGAATCAATGGA10.591715976331361No Hit
CGCTTGGAGAAACTGTGATGAGAATGGGAGACCTTCACTACCTCCAGAGC10.591715976331361No Hit
GTCTGGTGCCGCAGGTGCTGCGGTGAAAGGAGTTGGAACAATAGCAATGG10.591715976331361No Hit
ATTCAGGTTGGAATGCCAAATCATGATATGAGTAAGACCTGCTGTTGCAT10.591715976331361No Hit
AAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAGTGCCTGAGTCCAT10.591715976331361No Hit
GAGCGAAAGCAGGGTGACAAAAACATAATGGACTCCAACACCATGTCAAG10.591715976331361No Hit
GGGGAATCCTCATACACTGTTGGTGGGAATGTAAATTTGGCCTGGCACAG10.591715976331361No Hit
GATCCAGCATCGTTTGTTTTGCTCCAGAGGGTTTGTCCTTGTTCATTCCT10.591715976331361No Hit
GAAGAAATAGATGGGGTAAAGCTGGAATCAACAAGGATTTACCAGATTTT10.591715976331361No Hit
GCTTAAAATGGGAGCTAATGGATGATGATTATCGGGGAAGACTTTGTAAT10.591715976331361No Hit
GATCAAGATTGACGGAGAAATCATAAAAGAAGCTACACCTGTTATCGGCT10.591715976331361No Hit
TTCTAACCGAGGTCGAAACGTACGTTCTTTCTATCATCCCGTCAGGCCCC10.591715976331361No Hit
TCTCAGGACCCAGGAGTCAGAATGCGTTTGTATCAATGGAACTTGTACAG10.591715976331361No Hit
CCACATCAGGCCATGAGCCTGTTCCATATGTATCTGAGGTGCCACAAAAC10.591715976331361No Hit
GGTGACAAGATTGGTCTTGTCTTTAGCCATTCCATGAGAGCCTCAAGATC10.591715976331361No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGAGGGG10.591715976331361No Hit
GAATAAGAGGCTTACAGTTCTCGGAAAAGATGCAGGTGCATTGACCGAAG10.591715976331361No Hit
GTCTCACAGACAGATGGCTACTACCACCAATCCACTAATCAGGCATGAAA10.591715976331361No Hit
CCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACC10.591715976331361No Hit
GCATTCTACTTTGCTTTGGTGGAGCGGCTGCGAAGGGAAGAAGTTTTATT10.591715976331361No Hit
ACAATATATTGAGAACACAAGAGTCTGAATGTGCATGTGTAAATGGTTTT10.591715976331361No Hit
CGTGAAAACAAACCCTAAAATCCCCTTAGTCAGAGGTGACAGAATTGGTC10.591715976331361No Hit
ATCTCAAACCTTTCAAATGATGACACTGAGCTCAATTGCTCTCTTAGCTC10.591715976331361No Hit
ATCCAGCATCGTTTGTTTTGCTCCAGAGGGTTTGTCCTTGTTCATTCCTC10.591715976331361No Hit
GCTTTCTCAAATGTCCAAAGAAGTGAATGCCCAAATTGAACCTTTTCTGA10.591715976331361No Hit
CCATAGAAGTCTTTAGATCGAATGGCCTAACAGCTAATGAGTCAGGAAGG10.591715976331361No Hit
CCCAATCCATTGTCTGCAAATCGCTTGCGGATATGCCAAAGGAAACAGTC10.591715976331361No Hit
ATGCTATACAACAAAATGGAATTTGAACCATTTCAGTCTCTTGTCCCTAA10.591715976331361No Hit
AAAGAAGTGAACGCCAAAATTGAACCATTCTTGAGGACGACACCACGCCC10.591715976331361No Hit
ATCTATTAGTGTGCAGTTTTCTCCATCAAGGATCTGATGAGGACTGTCGC10.591715976331361No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers