FastQCFastQC Report
Fri 31 Jan 2020
000000000-CHT9C_l01_n01_BLANK_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-CHT9C_l01_n01_BLANK_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATAGACTCAGGTACTCCTTCCGTAGAAGGGCCTCTCTTAAGGCCGTG21.2048192771084338No Hit
GTATATTTTCAGAGACTCGAACCGTGTTACCATTCCATTCAAGTCCTCCG21.2048192771084338No Hit
CCATTGCCGTATTTGAATGAAAACCCTTTTACTCCATTTGCTCCATTAGA21.2048192771084338No Hit
ATGAAAAGAAGGCCAAACTGGCAAATGTTGTAAGAAAGATGATGACTAAT10.6024096385542169No Hit
CTGATATTCCAGATTCTGGTTGAAAGACACCCACGGTCGATTCGAGCCAT10.6024096385542169No Hit
CCTCTCAGGACAGCAGACTCCACCCCAGATGTGCCTTCATCTGGATCTTC10.6024096385542169No Hit
TACAAACCCTGGCCATGCAGATCTCAGTGCCCAGGAGGCACAGGATGTGA10.6024096385542169No Hit
ATTTTATCCTGAGCTGCATCTGTCAATTCAAGCACAAGATCCTGTTCGGC10.6024096385542169No Hit
TACATATTCTACACTGTAGAGACCCATTAGAGCACATCCAGAAACTGATT10.6024096385542169No Hit
GAATGGAACACGATGATTTCATCGATACGGTTTAAGAACTCAGGTCTGAA10.6024096385542169No Hit
GGTTAGAGATCAAAGAGGGAACGTACTATTGTCTCCCGAAGAAGTCAGTG10.6024096385542169No Hit
CCCCTACTGGGAGCCCAGACTGTTCAAGCTTTTCGCAAATGCTCCTAGCT10.6024096385542169No Hit
GCTAAAGACAAGACCAATCTTGTCACCTCTGACTAAGGGAATTTTAGGAT10.6024096385542169No Hit
GATTAACGGTCCTGAGTCGGTTTTGGTCAATACCTATCAATGGATCATCA10.6024096385542169No Hit
ATCGACTTCTCTACAACGCCATCGGCTTCGTGGCGGGCTGCCTGATTGCA10.6024096385542169No Hit
GACAAGACCAATCTTGTCACCTCTGACTAAGGGAATTTTAGGATTTGTGT10.6024096385542169No Hit
AGTAGAAACAAGGCAGTTTTTTACTCTAGCTCTATGTTGACAAAATGACC10.6024096385542169No Hit
ACCTTATATAGTCAAACCACACGAAAAGGGAACTGTCTCTTATACACATC10.6024096385542169No Hit
CTCCAACACCATGTCAAGCTTTCAGGTAGACTGTTTCCTTTGGCATATCC10.6024096385542169No Hit
ATCACATCCTGTGCCTCCTTGGCACTGAGATCTGCATGGCCAGGGTTTGT10.6024096385542169No Hit
CATTACAGTAAAGCAAGAACCATTTACACATGCACATTCAGACTCTTGTG10.6024096385542169No Hit
CACTAGACCAAAAGCAGCTTCTGTGGTCACTGTTCCCATCCTGTTGTATA10.6024096385542169No Hit
ACATACAAGAACATCGGCCTTGAAATTTGGCCTATGGCACTTCTTAGTAA10.6024096385542169No Hit
GTAGTAAACAGTATCTGCAACACTACTGGAGCTGGAAAACCGAAGTTTCT10.6024096385542169No Hit
GCATCATATTCCATACTTTTGGCCGGACCATGGGCTGGCATTACTACAGC10.6024096385542169No Hit
TTAGGGTTCGATATGGGCTCCTGTCTTTAATGGTTCCATTGGAATGTTTG10.6024096385542169No Hit
GTATAAGTTTGGTCCTCCATCTGATACTAATAGCCCTACCTTTGATTGGG10.6024096385542169No Hit
TTAATATGCTTCTTCTCGAGTGAATGGAACACGATGATTTCATCGATACG10.6024096385542169No Hit
GATGAGTTCTCTCATCCACTTTCCGCCTACTCTTCTATATATGGGTCCTC10.6024096385542169No Hit
CATGAAAACAGAATGGTGCTGGCTAGCACTACGGCAAAGGCTATGGAACA10.6024096385542169No Hit
TGTCAAAGGAAGGCACGATCGGGTTCGTTGCCTTTTCGTCCGCGAGCTCG10.6024096385542169No Hit
TGATGACACTGAGCTCAATTGCTCTCTTAGCTCCTCATAATCGATGAAAT10.6024096385542169No Hit
TAATGGACTCCAACACCATGTCAAGCTTTCAGGTAGACTGTTTCCTTTGG10.6024096385542169No Hit
GTAGAGACCCATTAGAGCACATCCAGAAACTGATTGCCCCCAGGGAGACT10.6024096385542169No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10.6024096385542169No Hit
TTATAGCACCCTTGGGTGTTTGACAAGTTGTATTGCAATCGTGGACTGGT10.6024096385542169No Hit
GTGTGCATAGCATGGTCCAGCTCAAGTTGTCACGATGGAAAAGCATGGCT10.6024096385542169No Hit
GTATCTGCTTCTCAGTTCCAGGGTATTGGAGTCCATGGTTTCCACATTCT10.6024096385542169No Hit
ATATATGGAGAAGCATTCGACATCAAGATTAGTCGGTTCACCTCCAGGAT10.6024096385542169No Hit
GAATGATGCCACATATCAGAGAACAAGAGCGCTTGTTCGCACCGGAATGG10.6024096385542169No Hit
TCAATGTACAGGATGAAGCTCAGGATTATAAAGATATGAAGGGCAAAGTG10.6024096385542169No Hit
CAGCTCAGGATAAAATCGCAGACGAAGGATTTGATCCTGAATATGGAGCA10.6024096385542169No Hit
CAATATGGAGAGAATAAAAGAACTGAGAGATCTAATGTCGCAGTCCCGCA10.6024096385542169No Hit
AACCATCTGAGACGAAACAAACATGAGGCATACACGATATACGTATGCCT10.6024096385542169No Hit
GTGGAATGAAAATCAAAATCCTCGAATGTTCCTGGCGATGATTACATATA10.6024096385542169No Hit
TGGTAACACGGTTCGAGTCTCTGAAAATATACAGAGATTCGCTTGGAGAA10.6024096385542169No Hit
CAGTTGGGGTCCTCATCGGAGGACTTGAATGGAATGGTAACACGGTTCGA10.6024096385542169No Hit
CCCCCAGACCAGTGTCTAACGGAGGTGGCCCTGCAGCGTCAGGGCGCATG10.6024096385542169No Hit
CAATTGAGAAAGGTCAAAAAGTTGTTCTTGATGTTACAGACGGTGAATTC10.6024096385542169No Hit
ACTCAGCACCGTCTGGCCAAGACCAACCCACAGTGTCACTGTTTACACCA10.6024096385542169No Hit
TCTCTGTATATTTTCAGAGACTCGAACCGTGTTACCATTCCATTCAAGTC10.6024096385542169No Hit
GATGATTTCATCGATACGGTTTAAGAACTCAGGTCTGAATGCCTTTTTCA10.6024096385542169No Hit
CTCTTTGGGTCGCCCTCTGATTAGTTCAACCCAGAAGCAAGGTCTTATAC10.6024096385542169No Hit
ATCCGAAACTTCCTTCTGCTTGCAGCGATTCGCTCTCGCCACTTGTCGCA10.6024096385542169No Hit
GTATAAGGGAATGTTGTGCTTATGGCATTTTGCGCTGGAACTTTTAAGAA10.6024096385542169No Hit
AGACAGGAGCCCATATCGAACCCTAATGAGCTGTCCTATTGGTGAAGTTC10.6024096385542169No Hit
CCGATGGACCAAGTAATGGACAGGCCTCATACAAGATCTTCAGAATAGAA10.6024096385542169No Hit
GATAATAGGCCCTCTTTGCGTGCGATTGGACCAGGCGATCATGGAAAAGA10.6024096385542169No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGACGGCGGGGGTGCCG10.6024096385542169No Hit
CAAATGGAGACTGGTGGGGAGCGCCAGGATGCCACAGAAATCAGAGCATC10.6024096385542169No Hit
CCCTTGGCCTCGATATCGAAACAGCCACTCTTGTTGGGAAACAAATCGTG10.6024096385542169No Hit
GGGGTGCAGATGCAACGATTCAAGTGACCCGCTTGTTGTTGCCGCGAATA10.6024096385542169No Hit
GTCTGGCTGTCAGTAAGTATGCTAGAGTCCCGTTTTCGTTTCATTACCAA10.6024096385542169No Hit
GTGCTAGCCAGCACCATTCTGTTTTCATGCCTGATTAGTGGATTGGTGGT10.6024096385542169No Hit
CCCTCTTTGCGTGCGATTGGACCAGGCGATCATGGAAAAGAACATAGTAC10.6024096385542169No Hit
GTGCTTTCTCAATCTCATCAAGAAGAACAACTGAATAAGGCTTTCTGCGG10.6024096385542169No Hit
TCTCTTACTTGATCCATCATTGCCCTCTGGGCAGCTGTTTGAAATTTTCC10.6024096385542169No Hit
GTGCCAGAGCGGGACTTAAAGATCCAAAACGTCCTATCGGTTCATTTGTA10.6024096385542169No Hit
CTAAAATAGATCTCTGGTCATACAACGCGGAGCTTCTTGTTGCCCTGGAG10.6024096385542169No Hit
CTGGTACATCTGTTCATCCTCAAGAATTCCCCTTTGGCTTGTGTTGAGAA10.6024096385542169No Hit
GCACTGGAGCTAGGATGAGTCCCAATAGTTCTCATTGCATGTACCATCTG10.6024096385542169No Hit
TGTTTTTGTGGGGTCATCAAGATACAGCAAGAAGTTCAAGCCGGAAATAG10.6024096385542169No Hit
CTCATTTTCCTGGCACGGTCAGCACTCATTCTGAGGGGATCAGTTGCACA10.6024096385542169No Hit
AGGTAGTGAAGGTCTCCCATTCTCATCACAGTTTCTCCACGCGAATCTCT10.6024096385542169No Hit
TCACTAAGCTATTCAACTGGTGCACTTGCCAGTTGCATGGGCCTCATATA10.6024096385542169No Hit
CCCCATTGTCTGGGCCAGAAATTCCAATTGTTAGCCAATTGATGCCATCA10.6024096385542169No Hit
GTTAATGGCAGACCAATTAATGAAACGTCTAGCCGAACAGGATCTTGTGC10.6024096385542169No Hit
GGACATACTTATGAGGATGTCAAAAATGCAGTTGGGGTCCTCATCGGAGG10.6024096385542169No Hit
GGATTGGGTGATGCCCCATTCCTTGATCGGCTCCGCCGAGATCAAAAGTC10.6024096385542169No Hit
GCATATCCTGACCCCTGCTCATTTTGATGGTGATAACCGTACCATCCATC10.6024096385542169No Hit
AGTCAGTGAAACGCAAGGAACTGAGAAGTTGACAATAACTTATTCGTCAT10.6024096385542169No Hit
CTTCATTATGTATTCAGTAGCCCTGCAGTGGGACACTTCTGCTGCTGTCT10.6024096385542169No Hit
CCAGTTGAATAGCTTAGTGACACCTCCTTGGCCCCATGGAACGTTATTTC10.6024096385542169No Hit
CTTTCAATCTGTGCCGCATTTCTTCAATTAACCACCTTATTTCCTCAAAT10.6024096385542169No Hit
ATCGTGTTCCATTCACTCGAGAAGAAGCATATTAAAGAGATCGTGACGTT10.6024096385542169No Hit
CTACGGAAGGAGTGCCTGAGTCCATGAGGGAAGAATATCAACAGGAACAG10.6024096385542169No Hit
GAAGTTCGCTTTCAGTATTATGTTCTTTTCAATGATCGCCTGGTCCAATC10.6024096385542169No Hit
ACAATGACCTTGGACCTGCAACGGCCCAGATGGCTCTTCAATTGTTCATC10.6024096385542169No Hit
GGATAATTCTATTAACCATGAAGACTATCATTGCTTTGAGCTACATTCTA10.6024096385542169No Hit
ATATAAACTACTAGGGAAAAATTTCTCGAACAAGTTGCAGCACTTCTGGT10.6024096385542169No Hit
ACACCAGCCTCCCATTTCAGAATATACATCCGATCACAATTGGAAAATGT10.6024096385542169No Hit
TCTTTCAGTTTTGGTGGGTTCACTTTCAAAAGGACAAGCGGATCATCAGT10.6024096385542169No Hit
TTATTTCTCTTTTGAGCTTCTTGTATAGTTTAACTGCTCTATCCATGTTG10.6024096385542169No Hit
CACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTCCAAAATG10.6024096385542169No Hit
CTTATCTCTTGTTCTACTTCAAGCAGTAGTTGTAAGGCTTGCATAAATGT10.6024096385542169No Hit
ATCCTCAAAGGAAAATTTCAAACAGCTGCCCAGAGGGCAATGATGGATCA10.6024096385542169No Hit
GCTCACTTGATCCAGCCATTTGCTCCATAGCCTTAGCTGTAGTGCTGGCC10.6024096385542169No Hit
GCTGCAAATTTGTTGGTTTCAATTTTCAGATCCTCCCCATACTCTTTCAT10.6024096385542169No Hit
AAACAAGGGTATTTTTCCTCAACTGTCATACTCCTCTGCATTGTCTCCGA10.6024096385542169No Hit
CTACTAAGGGCTTTCACTGAGGAGGGAGCAATAGTTGGAGAAATTTCACC10.6024096385542169No Hit
CAGCCATCTGTTCCATAGCCTTTGCCGTAGTGCTAGCCAGCACCATTCTG10.6024096385542169No Hit
GTAGTTGTAAGGCTTGCATAAATGTTATTTGTTCGAAACTATTCTCTGTC10.6024096385542169No Hit
GGTAAAACAGAGCTTGCACGTGCACTTGCTGAATCTATTTTCGGTGACGA10.6024096385542169No Hit
GTGTAGAGATCACATGAAAAAAAAAAAAAATGCAACTAGATCTCAAAGGA10.6024096385542169No Hit
ATTAAAGACAGGAGCCCATATCGAACCCTAATGAGCTGTCCTATTGGTGA10.6024096385542169No Hit
CAAAGAAGAAATAAGGAGAGTTTGGCGCCAAGCAAACAATGGCGAAGATG10.6024096385542169No Hit
GACAGGGACATTTGAATTCACAAGCTTTTTTTATCGCTATGGATTTGTGG10.6024096385542169No Hit
AAAGCAGGGTGACAAAAACATAATGGACTCCAACACCATGTCAAGCTTTC10.6024096385542169No Hit
TTCCCATTTAGGGCATTTTGGACAAAGCGTCTACGCTGCAGTCCTCGCTC10.6024096385542169No Hit
GTACAGATGCAATTGTCATTCTAAGTGTCTCGCTGGATTCCTCTTTCAAG10.6024096385542169No Hit
ATTTCCAAGAGAGATGCTAATGGGTCTGCTGAAACTGCTGCTCTTCTTAC10.6024096385542169No Hit
GAGCGAAAGCAGTCCGCCGTGCCAGAGCGGGACTTAAAGATCCAAAACGT10.6024096385542169No Hit
ATACAGAGATTCGCTTGGAGAAACTGTGATGAGAATGGGAGACCTTCACT10.6024096385542169No Hit
GTCTTATACAATCCAGCCCTGTTAGTTCTGGATGCTGAACAAAACTCCCG10.6024096385542169No Hit
CTCATAGTGAATGCACCAAACCATGAGGGAATACAAGCAGGAGTGGACAG10.6024096385542169No Hit
CATGAGAACAGAATGGTTTTGGCCAGCACTACAGCTAAGGCTATGGAGCA10.6024096385542169No Hit
TAGAAGGGCCATCCAAAAACATGTAGAAGACAGATTGTCCGAAGAGCTGC10.6024096385542169No Hit
CTATTGGGACTCATCCTAGCTCCAGTGCTGGTCTGAAAGATGACCTTCTT10.6024096385542169No Hit
GGATCACTTGAATCGCTGCATCTGCACTCCCTGTCTCTTATACACATCTC10.6024096385542169No Hit
ATATAAGGTTCTTTCCATCCAAAGAATGTTTTTATGCACTTGATCGCATC10.6024096385542169No Hit
GTACACATCAGGAAGGCAAGAGAAGAACCCCGCACTAAGAATGAAGTGGA10.6024096385542169No Hit
AAATACGTTGGCTTCAATGTACAGGATGAAGCTCAGGATTATAAAGATAT10.6024096385542169No Hit
GTAGAAGACAGATTGTCCGAAGAGCTGCTGAGAGGAACAATTGAGAAAGG10.6024096385542169No Hit
CACCAATAGGACAGCTCATTAGGGTTCGATATGGGCTCCTGTCTTTAATG10.6024096385542169No Hit
TCACAGCAGTAGGTAAAGAGTTCAACCACCTGGAAAAAAGAATAGAGAAT10.6024096385542169No Hit
GTCTTCTACATGTTTTTGGATGGCCCTTCTAAGCGGCCGTGCTCCATATT10.6024096385542169No Hit
CACTAAACAACGTGCATTCAAATAACACAGTACATGATAGGACCCCTTAT10.6024096385542169No Hit
TATTAAATTTTTGTAGAAGCTTTTTGCTCCAGCATGAGGACATGCTGCCG10.6024096385542169No Hit
AAACAAAAGCAACAAAAATGAAGGCAATACTAGTAGTTCTGCTATATACA10.6024096385542169No Hit
GAGCGAAAGCAGGTAGATATTTAAAGATGAGTCTTCTAACCGAGGTCGAA10.6024096385542169No Hit
GACATTACTACTGTACAAGTTCCATTGATACAAACGCATTCTGACTCCTG10.6024096385542169No Hit
CTAATAGATGGCACAGCATCATTGAGCCCTGGAATGATGATGGGCATGTT10.6024096385542169No Hit
ATCCTGAGCTTCATCCTGTACATTGAAGCCAACGTATTTATTGCGTTTAA10.6024096385542169No Hit
ATATGTAAAAAGCACAAAATTGAGACTGGCCACAGGATTGAGGAATATCC10.6024096385542169No Hit
GTCCTGAGAGGATTTCTCATTTTGGGCAAAGAAGACAAGAGATATGGCCC10.6024096385542169No Hit
GTATACATCGTGGTCATAAGTTCCATTTCTGATTGATCCTATGCAGGCAT10.6024096385542169No Hit
ATCCATGTTGTTCGGGCCCCCATTCCCATTTAGGGCATTTTGGACAAAGC10.6024096385542169No Hit
CCTCATAATCGATGAAATCTCCTGGGTAACACGTTCCATTGTCTGAACTA10.6024096385542169No Hit
ATCTACTAGTGCTGACCAACAAAGTCTCTATCAGAATGCAGATGCATATG10.6024096385542169No Hit
CATAATGGACTCCAACACCATGTCAAGCTTTCAGGTAGACTGTTTCCTTT10.6024096385542169No Hit
GGATACATATGCAGTGGGATTTTCGGAGACAATCCACGCCCTAATGATAA10.6024096385542169No Hit
ACAGGAGCATTCCTCATAGTGATAATTAGGGGCATTCATTTCGACTGATT10.6024096385542169No Hit
ACGGAATCTGATGTCGCAGTCTCGCACTCGCGAGATACTGACAAAAACCA10.6024096385542169No Hit
GTAGATGGATGGTACGGTTATCACCATCAAAATGAGCAGGGGTCAGGATA10.6024096385542169No Hit
GACCCCTCACTTTGGGTCTTATTGCTATTTCCGGCTTGAACTTCTTGCTG10.6024096385542169No Hit
TCCTCTTTGTTCATTGATTCCATTACATCCTTTAAGAAATCTATTAGCCT10.6024096385542169No Hit
GATTTTAGGGTTTGTTTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGC10.6024096385542169No Hit
GTGATGAATGAATTGAAAAAGGCATTCAGACCTGAGTTCTTAAACCGTAT10.6024096385542169No Hit
GTAATACTCCAACCATTCCCATCACACTGTCGATGTGTTCAACTCCCCAA10.6024096385542169No Hit
CTCTTCTATTGGCAGTGCCTGTTTTCACAATTTCCTCTGTCATCGTATTC10.6024096385542169No Hit
CTCACAGACAGATGGCTACTACCACCAATCCACTAATCAGGCATGAAAAC10.6024096385542169No Hit
GTCTAAGGATGTCCACCATCCTTACTCCTCCAATCTGTGTGCTGTGGCAC10.6024096385542169No Hit
GAACTGAGGCTTGTGTGGCCATTATGGCGCATAAGCAAGATGAGATTTTG10.6024096385542169No Hit
CTCAGGCACTCCTTCCGTAGAAGGCCCTCTTTTCAAACCGTATTTAAAGC10.6024096385542169No Hit
GCCTCCTCGGTTAAGGATCGCAAGCACATGTCTTACAAGGACTGGGCAAC10.6024096385542169No Hit
GTTCTATTGGAAAATGAAAGAACTTTGGACTACCACGATTCAAATGTGAA10.6024096385542169No Hit
GCTCATGCCTAGGCAAAAGATAATAGGCCCTCTTTGCGTGCGATTGGACC10.6024096385542169No Hit
GAGCAGATGTACACTCCAGGAGGAGAAGTGAGAAATGATGATGTTGACCA10.6024096385542169No Hit
GAGGAATGCTCCTGTTATCCTGATTCTAGTGAAATCACATGTGTGTGCAG10.6024096385542169No Hit
CAGAAAGCCTTATTCAGTTGTTCTTCTTGATGAGATTGAGAAAGCACACC10.6024096385542169No Hit
CTGTAGAGACCCATTAGAGCACATCCAGAAACTGATTGCCCCCAGGGAGA10.6024096385542169No Hit
TCTGTATACATCGTGGTCATAAGTTCCATTTCTGATTGATCCTATGCAGG10.6024096385542169No Hit
CGATTGGCTCTGTTTCTCTCACCATTTCCACAATATGCTTCTTCATGCAA10.6024096385542169No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers