FastQCFastQC Report
Mon 23 Sep 2019
000000000-C9WWL_l01.3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-C9WWL_l01.3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7728509
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTACGG130974116.94687811064204No Hit
TTCTGGTT116054615.01642813639733No Hit
GTTATATG96195912.4468898205333No Hit
CTAGATCT77407110.015787003676905No Hit
ATTCCGGT7392149.564768573084407RNA PCR Primer, Index 37 (100% over 8bp)
ACCTTCCA7204189.321565129832935No Hit
ACGCTTAA6672278.63332112312996No Hit
GGAGTCTG5809967.517569042101135No Hit
CGTTACTC4826666.245266713152563No Hit
ACGCTTCA385590.4989190023586697No Hit
GGGGGGGG91310.11814698022606948No Hit
GTTATATT78820.10198603637519216No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)