FastQCFastQC Report
Wed 13 Nov 2019
000000000-C7PW4_l01_n01_S1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-C7PW4_l01_n01_S1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1588937
Sequences flagged as poor quality0
Sequence length251
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCTGG20250.0031145636.6543211
CATCTCC20700.0039207426.509662245
CCCGCCC22650.00140392086.490066245
ACACACC25006.122236E-46.37245
TGAAGGA23900.00256984056.15062761
TGATGTT22000.00739125166.12499953
CATGATC25400.0050668485.78740171
GTGCTTC25900.0062881975.6756768
Produced by FastQC (version 0.11.5)