FastQCFastQC Report
Wed 14 Aug 2019
000000000-C6PWG_l01_n02_ALm220RM.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-C6PWG_l01_n02_ALm220RM.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences648556
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGG2050.032.4390221
ATCGGGA2200.030.2272722
CGGGTAC1050.002195197622.6190452
CGGGAGA4200.019.2261894
GCGCTAA757.721787E-419.042-43
GGGTATC1300.007559665518.2692322
GCGGGTA1154.2716016E-516.5217414-15
GTTTAAT3657.111448E-714.3150681
GGGAAAC3708.292154E-714.1216221
AGAGCGG3405.3704243E-613.9705888
CGGGTAG1553.4967736E-513.79032214-15
CGCCCAT2450.001286262413.5714291
TCGGGAG4303.1023956E-713.2558153
TCGTGTG2150.00851410913.2558152
TTCGGGT1100.00991660412.95454654-55
AGAGGGG8600.012.7034888
GAGAGCG3408.30614E-512.5735297
GAGAGGG7207.2759576E-1212.5347237
ATTGAAT3156.162775E-412.0634936
GCCAGTT4507.441715E-611.6111111
Produced by FastQC (version 0.11.5)