FastQCFastQC Report
Wed 14 Aug 2019
000000000-C6PWG_l01_n02_ALm219RM.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-C6PWG_l01_n02_ALm219RM.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences720564
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGG1551.3551471E-930.645161
GGCGAAT908.9442934E-426.3888911
GCGAATT1000.001653048723.7500022
GAATCGA1200.00476180619.7916684
ATCGGGA2101.9541532E-518.0952382
AGAGCGG2555.500442E-616.7647068
GCAATCC2304.2673593E-516.521743
GGATCCG2500.00149818613.3000014
CTTATGT2500.00149818613.3000011
TAGGGGG2601.7435013E-812.78846236-37
TTTGCCG2650.002322227512.5471697
GGGGAAT3156.1642384E-412.0634931
GGGTAAT2800.003508313811.8751
ATCCAAT2800.003508313811.8756
GATTGGG2800.003508313811.8751
AATCCAA4456.5739114E-611.7415735
CAATCCA3350.001033110711.3432844
GAGAGCG4204.709801E-511.3095247
CTTGGAT5809.826053E-710.6465511
CGGGTAG1800.001885836610.55555614-15
Produced by FastQC (version 0.11.5)