FastQCFastQC Report
Wed 14 Aug 2019
000000000-C6PWG_l01_n02_ALm212RM.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-C6PWG_l01_n02_ALm212RM.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences736649
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGG1800.050.1388931
CTCGTAT608.287853E-539.5833361
ATCGGGA2550.035.392162
CGCGTCA600.00395003931.6666681
CCGCAAT856.4049783E-427.9411751
GCGGTAT700.00838964827.1428591
CGGGAGA5100.026.0784324
TCGGGAG5050.019.7524763
GAGAGCG3557.8216544E-1118.7323937
AGAGCGG3301.2079909E-817.2727288
ACGGGAG2253.5348094E-516.888893
AACGGGA2457.3256604E-515.5102032
CGCGAGG1900.003752216715.01
GTGCGGT2000.005275616414.258
CCGGATT2100.007288717713.5714281
GTCGGCC2450.00128655313.5714271
TCCAATC3204.707461E-513.3593767
GAGCTAG2150.00851555413.2558145
GAGAGGG8300.013.1626517
GGGAGAG11950.012.7196665
Produced by FastQC (version 0.11.5)