FastQCFastQC Report
Wed 14 Aug 2019
000000000-C6PWG_l01_n02_ALm211RM.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-C6PWG_l01_n02_ALm211RM.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences779610
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAATCCG250.00502067257.04
GATCGGG2400.041.56251
ATCGGGA3200.031.1718772
CGGGAGA5750.028.9130424
CGCAACT1150.003722218320.6521763
GCGGGAT1250.00602944219.01
TCGGGAG5800.018.8362083
CGGGTTT1801.2326748E-418.4722211
ACGGGAG3105.5733835E-918.3870963
AAGCGGC2355.1309733E-516.1702149
AAAGCGG2406.1432394E-515.8333348
GAGAGGG9550.015.4188477
GGGAGAG12550.015.1394435
GAACGGG3253.3669166E-614.6153861
CACGGAT1950.004459745314.6153851
AGAGGGG9200.014.4565238
GGAGAGG11900.013.9705886
ATTAGGT2050.006214360213.9024386
TAGGGGG2651.5788828E-913.44339736-37
GGGATTC3951.7328057E-613.2278483
Produced by FastQC (version 0.11.5)