FastQCFastQC Report
Wed 14 Aug 2019
000000000-C6PWG_l01_n02_ALm210RM.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-C6PWG_l01_n02_ALm210RM.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences788379
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGG3050.052.9508251
ATCGGGA4050.039.8765452
CGGGAGA4900.032.9591834
CGCTATT650.00584297329.230771
TACCGTA700.00839000127.1428559
TCGGGAG5550.024.819823
CGGCAAT1503.0316536E-522.1666681
TCGGGAA2752.8339855E-819.03
CGGATTC1559.620872E-418.3870963
CTCGGTT1600.001190564217.81251
CGGGAAA3251.0004442E-817.5384624
AGGGGCG4650.017.36559110-11
GAGAGGG9050.017.3204427
GGGAGAG10600.017.0283035
CCCTATG2850.016.66666634-35
ACGGGAG2002.7589523E-416.6253
GAGGGGC9500.016.09
CTTATAT1800.002617631815.8333331
CGGGTAG1906.8766894E-815.014-15
AGAGGGG9850.014.9492398
Produced by FastQC (version 0.11.5)