FastQCFastQC Report
Wed 14 Aug 2019
000000000-C6PWG_l01_n02_ALm209RM.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-C6PWG_l01_n02_ALm209RM.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences889468
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGG4250.049.176471
ATCGGGA4750.044.02
CGGGAGA7000.030.5357114
TCGGGAG6150.029.3495923
CGGGAAA4050.023.456794
TCGGGAA2903.6379788E-1222.9310343
GGGTATA3000.022.16666634-35
GAGAGGG11100.020.540547
AGAGGGG12350.020.08
AGGGGCG7050.018.86524810-11
GTCGAAA1350.00939877917.5925921
AGGGTAT3800.017.50000232-33
GAGGGGC11750.017.382989
GGGAGAG14800.017.331085
AAATCGG2451.8189894E-1216.47959346-47
AGAGCGG3201.6016384E-716.3281258
TATCGGG1752.5034751E-816.28571348-49
TCGGGGG8200.015.92987850-51
GGGGATT3603.5342964E-815.8333331
GGAGAGG16000.015.7343766
Produced by FastQC (version 0.11.5)