FastQCFastQC Report
Wed 14 Aug 2019
000000000-C6PWG_l01_n02_ALm204RM.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-C6PWG_l01_n02_ALm204RM.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences746781
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGG1754.954927E-927.1428571
ATCGGGA2309.009818E-820.6521742
CGACAAC1250.00602920819.08
CGGGTTT1350.00939740617.5925921
CGGAAAG2104.000711E-415.8333331
ACGTTCT2050.006214036613.9024383
GGCGTTT2050.006214036613.9024381
GCGTACT1050.007293329613.57142862-63
GAGAGCG3204.707631E-513.3593767
GGGCGAT2150.00851569413.2558141
CGGGAAC3004.087604E-412.6666671
CGGGAGA4901.105509E-712.602044
AGGGGCG4100.012.16463410-11
CGGAGAC3207.0368935E-411.8750011
GGTTAGA1801.418561E-411.87530-31
CGGGGCT4901.5093938E-611.6326521
AGATCGA3050.00663889110.901644
GTTAGAG2259.513591E-510.55555532-33
GGGAGAT7804.0508894E-910.3525651
CTTGGAT5556.717817E-610.270271
Produced by FastQC (version 0.11.5)